Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g0785 ATGGATAAGCAGAACCAAAACGACATTCAGTTGATTTACCGAGACATTGCACAGGCGTGGAATAAAACGACGACGTATTACACAAATGAAAGGATTATAGGGATGGCTTTCTTTGGTAGAGTTGGGAATATACTAAGACAGGCTGCAAATAAGCAGCTCAGTTCAGAATTACGTTCAGCTTCATCTATTTTCCAGGCTATACGGTGCATGTCATCTGCTGCAAGTTCAAGGGTGTTTGTAGGAGGACTGTCGTATAACACTGATGAGCAAAGTTTGAGGGAGGCTTTTGCGAAATATGGTGAAGTAGTTGATGCAAGGGTAATTATGGATCGTGAGACTAATAGATCTAGAGGGTTTGCCTTTGTCACTTTCACATCAGTTGAGGAGGCATCAAGTTCCATTCAGGCCTTAGACGGACAGGATCTTGATGGTCGCCAAGTTCGGGTAAATTACGCTAATGAGAGGCCTCGATATGGTGGTGGTGGTGCTGGCTATGGAGGCGGTTATGGTAATTCTCTCTATGGTGGTTCTGGTGCATATGGTGGCAATGCTGCTGGAGGTTATGGTGGTGGCGGATATGGTGGAGGAAGCTATGGATCAGGTGGCAGCACAGGAAATAACTATGCTTCTAACAATTTTGGAGCCGGAGCTGCAGGTAGCAGTTATGGAAATGATGGTAACTTTGTGAGTGGAACCCCTTATGGTGGTGGAAGTGATGGAGGATATGGTGGGAGCAGTGGAAGTGGAACTACTGCTGACAGCTTTGGAACTGGAAGTGCTGTTGGTGGCTTTGGCGGAAGCAATTATGCAAAAGATGGGAACTTTGTGAGAAGCCCTTATGCTGGTGGCAGCAGTGGAGGATATGGCAGCAACAGCGGAAACTTTGGTGTTGCTGGTGGTGATGGAGGTAGTGATAACTATGGAAGTGCTCCTAGTTTTGGTTCTGCTGTGGGTGGTGGCAGTGATAGCTTTGGTGGTTTGGCTGATTTTGGTAGCAGTGATGGTCCAGGTTCAGGCAGCAGCTTTGCCATTGGACACAATGGAGGCATCGGCAGCAGTGGTCAATTGGATGGCAAAGAAAGCGACAATATAGGTCAGGATATCGGAGATTTTGGGGGCACACGGGAGGAAAACTTCAGGGATGATGATGCTGGTAATTTTGCCAAAAGGGCTTGA 1176 0.4711 MDKQNQNDIQLIYRDIAQAWNKTTTYYTNERIIGMAFFGRVGNILRQAANKQLSSELRSASSIFQAIRCMSSAASSRVFVGGLSYNTDEQSLREAFAKYGEVVDARVIMDRETNRSRGFAFVTFTSVEEASSSIQALDGQDLDGRQVRVNYANERPRYGGGGAGYGGGYGNSLYGGSGAYGGNAAGGYGGGGYGGGSYGSGGSTGNNYASNNFGAGAAGSSYGNDGNFVSGTPYGGGSDGGYGGSSGSGTTADSFGTGSAVGGFGGSNYAKDGNFVRSPYAGGSSGGYGSNSGNFGVAGGDGGSDNYGSAPSFGSAVGGGSDSFGGLADFGSSDGPGSGSSFAIGHNGGIGSSGQLDGKESDNIGQDIGDFGGTREENFRDDDAGNFAKRA 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g0785 391 SUPERFAMILY RNA-binding domain, RBD 75 183 IPR035979 GO:0003676
Lele20g0785 391 MobiDBLite consensus disorder prediction 373 391 - -
Lele20g0785 391 MobiDBLite consensus disorder prediction 327 391 - -
Lele20g0785 391 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 78 148 IPR000504 GO:0003723
Lele20g0785 391 Gene3D - 40 171 IPR012677 -
Lele20g0785 391 MobiDBLite consensus disorder prediction 334 360 - -
Lele20g0785 391 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 76 154 IPR000504 GO:0003723
Lele20g0785 391 SMART rrm1_1 77 150 IPR000504 GO:0003723
Lele20g0785 391 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 57 240 - -
Lele20g0785 391 CDD RRM_HP0827_like 77 153 - -
Lele20g0785 391 SMART rrm2_1 77 150 IPR003954 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g0785 Lele-ChrLele20 14711649 14714240 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g0785 78 164 Eukaryotic Initiation Factors Gene Family AT4G34110 37.931 5.54e-11 62.4