Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g0781 ATGGCGAAATCAGCTAGCCCAGATGCGATTTCGATATTGCTTGCCAACCCGTCACCAGATTCCTCCTTGGAGCTTCCTGAAATCATCGTCCAAGTTCTGGATCTCAAGCAAAGCGGCAACAGATTCATGTTCACCGCTAACGATGGGAAGATGAAGTTAAGGGCAATCCTCCCTTCTAATCAGAATTCCCAAGTCATTTCAGGAAGTATTCAGAACCTGGGTCTTATCGGCATAGTTGATTATACTCTCAATGATATCCCAAACAAGTCAGAGAAATATCTTATTGTTACAAAATGTGAATCGGTCTCTCCTCCTCTTGAAATGGAGATAAAAACAGAAGTCAAGAGTGAGTGCCCCGCCATGCTTTTGAATCCAAAGCAAGAGGGTGAAACCAAAAGTGAAGCTGCTGGCATTATTTTGAGACCGAAGCAAGAAATGGTGTCCAAATCTGCCGCTCAGATTGTACATGAACAACATACAAACACTGCCCCTACTGCACGGATGGCAATGACACGCAGGGTGCGCCCTCTTGTTTCCTTAAATCCGTATCAGGGTAATTGGACGATAAAGGGCACTCAAATTCAAGCAACAATGTTTAATGAGGCTGCCAGGAAATTTTATGACAGATTTGCGCTTGGGAAGGTTTACTACATTTCCAAGGGAACTTTAAAGGTTGCTAACAAACAGTTCAAAACTGTCCAAAACGATTATGAGATGACATTGAATGAGAATTCTGAGGTGGAAGAGGCAGCCAATGAAGAAAGTTTTGTTCCAGAAACAAAGTTTAACTTTGTCCTGATTGATCAGCTGGGTCCTTTTGTCAATAGGGGTGACCTTGTTGATGTCATAGGAGTTGTTCAGAATGTGTCTTCCACCATGAGCATTCGAAGGAAGAGTAACGATGAGAGTATTTCAAAGCGTGATATTACTATTGCTGATGAAACCAAGAAGACAGTGGTTGTGTCTTTGTGGAGTGAACTTGCAACTAATGTAGGGCAAGAATTGCTGAACAATGCTGATAAATCTCCAATAGTTGCAATCAAGTCTCTCAAAGTTGGGGATTTTCAGGGTGTTTCCTTGTCAACTATAAGCAAAAGTATAGTTCAGATAAATCCTGATATACCTGAAGCAAAAAAGCTTAGATGCTGGTATGAGTCTGAAGGTAAAGACGCTCCAATGGCTTCCATTGGCTCTGGTGCATCTGCAACCAAAAATGGAACGAGATCAGTGTACTCTGACCGTATTTCACTAGCTCAAATAACCTCGAACAAATCCTTGGGAGAGGACAAGCCTGCATTTTTCAGTATCAGGGCACATATAAGCTCCATTAGGCCTGATCAGACAATGTGGTATCGGGCTTGTACAACTTGCAACAAGAAAGCCACTGAAGCCATTGGGTCTGGCTATTGGTGTGAAGGCTGCCAGAAAAATGTTGAAAGCACTTTAAGGTATATTTTGGTTGCAAGAGTTTCTGATGCAAGTGGTGAAGCTTATGTCTCGATCTTCAATAATGAAGCTGAGGAGATTGTTGGGTGTTCTGCTAATGAGCTAGATAGCCTAAAATCACAGGAGGGAGAAGATAACCCATACCAAATGAAGTTGAAACGAGCGACTTGGACCCCGCATCTATTACGTGTTAGTGTTTCTCAGAATGAGTATATGAACGAGAAGAGGCAGAGGATAACTGTCCGAGCTGTTGCTCCTGTTGATTATGCTGCCGAGTCAAGAATTCTCCTGGAAGAAATTTCAAAGGCGACAGCTTCACAATAA 1770 0.4249 MAKSASPDAISILLANPSPDSSLELPEIIVQVLDLKQSGNRFMFTANDGKMKLRAILPSNQNSQVISGSIQNLGLIGIVDYTLNDIPNKSEKYLIVTKCESVSPPLEMEIKTEVKSECPAMLLNPKQEGETKSEAAGIILRPKQEMVSKSAAQIVHEQHTNTAPTARMAMTRRVRPLVSLNPYQGNWTIKGTQIQATMFNEAARKFYDRFALGKVYYISKGTLKVANKQFKTVQNDYEMTLNENSEVEEAANEESFVPETKFNFVLIDQLGPFVNRGDLVDVIGVVQNVSSTMSIRRKSNDESISKRDITIADETKKTVVVSLWSELATNVGQELLNNADKSPIVAIKSLKVGDFQGVSLSTISKSIVQINPDIPEAKKLRCWYESEGKDAPMASIGSGASATKNGTRSVYSDRISLAQITSNKSLGEDKPAFFSIRAHISSIRPDQTMWYRACTTCNKKATEAIGSGYWCEGCQKNVESTLRYILVARVSDASGEAYVSIFNNEAEEIVGCSANELDSLKSQEGEDNPYQMKLKRATWTPHLLRVSVSQNEYMNEKRQRITVRAVAPVDYAAESRILLEEISKATASQ 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g0781 589 FunFam Replication protein A subunit 399 585 - -
Lele20g0781 589 Pfam Replication factor-A C terminal domain 433 577 IPR013955 -
Lele20g0781 589 Pfam Replication protein A OB domain 274 371 IPR031657 -
Lele20g0781 589 Gene3D - 257 396 IPR012340 -
Lele20g0781 589 Gene3D - 6 112 IPR012340 -
Lele20g0781 589 SUPERFAMILY Nucleic acid-binding proteins 262 390 IPR012340 -
Lele20g0781 589 FunFam Replication protein A subunit 190 252 - -
Lele20g0781 589 FunFam Replication protein A subunit 4 114 - -
Lele20g0781 589 Pfam Replication factor-A protein 1, N-terminal domain 6 103 IPR007199 GO:0003677|GO:0005634|GO:0006260
Lele20g0781 589 SUPERFAMILY Nucleic acid-binding proteins 412 584 IPR012340 -
Lele20g0781 589 CDD RPA1_DBD_A 176 249 - -
Lele20g0781 589 SUPERFAMILY Nucleic acid-binding proteins 176 253 IPR012340 -
Lele20g0781 589 Gene3D - 397 585 IPR012340 -
Lele20g0781 589 CDD RPA1_DBD_C 417 584 IPR013955 -
Lele20g0781 589 SUPERFAMILY Nucleic acid-binding proteins 2 107 IPR012340 -
Lele20g0781 589 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 191 584 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Lele20g0781 589 CDD RPA1_DBD_B 279 385 - -
Lele20g0781 589 PANTHER REPLICATION FACTOR A 1, RFA1 187 548 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Lele20g0781 589 FunFam Replication protein A subunit 256 395 - -
Lele20g0781 589 Gene3D - 190 252 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g0781 Lele-ChrLele20 14691825 14695099 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g0781 1 589 Core DNA Replication Machinery Family AT5G08020 62.379 0.0 800