Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g0758 ATGGAGGGGAAATGGATGATAAACAAAATCGTTGTTCAAGTGCGCCAACGGAATAACTGGCTCTTCCGAAGACGAACGCCTCGGAGCTCAGCTCACACAAAGATGTCGTTTGTTCCGAGTCCCCCAAATAAACGACTCAAGGCCCAAGACCAGGAGGACTCCGATCAGAACCTCTATCTGCCACCTTCGTTCGACGATGCCCAGCCTGATTCTTGTGGAATTTGCTACGCCAACCATGGCACTTCAATCAGAGGTGAAATTGATTGTTGCAGTCACTTTTTTTGCTTCATCTGCATCATGGAATGGTCCAAGCATGAGTCTCGATGCCCCCTCTGTCGACAAAGATTCTCCACCGTTCGCCGCCCCCCTAAGCCCGGCGTCTTCCCTTCCTCGCGTCTCGTTAAAGTTCCTATTCGGGACCAGGTTTACCATGTTCATGGAAATATCACGACAGGTCCTGTGGATCCTTATTCTGAAACTCGGTGCAGTGTCTGTAAGGGTGAGGAAGATGAAAGTTTTCTTCTACTATGTGATCTTTGTGATACTGCTTCTCATACATATTGTGTTGGCCTCGGCTATGTTGTGCCTGAAGGTGATTGGTTTTGTCAAGATTGTTCTGTTTCCAAGGAAATTAGTGACAATAACAATGTAGACCATCAAGGCGACATACCAACAGCTGAGCCAAGTGTAACAATCCTTGATATTCTGAGAGAATCAAGACCGTCTCCTCTGGTCACCCCTTTACCTGATAGGATGAATAGAAACAAAGATAGAAATCGTGACATGAGTGTTATTGCCCCTTTACCAGATAGGGTGAATAGAAACAAAGATAGAAATCATGACATAACTGCTCGGACATTGCGCCGATGTCGCAATGTGCAAAGTAATATACAAGCTTTGCGTGAAAATTGGAATGCTTTGAGAAATGGTTCATTAAGGTTCTCTTCCACTGCGTCTGAATCTGGTGTCAGACGTGTTAAACAACAGAATAGTGATTCCTTACATCGTAGAAAGTCAGATCAACTGCATTCTTCGGCGGCTTCCACAAGCCTTCAGCAATCTATAATTCAAAGTAGTAGACCTTCTAATAACATATCGAATGAGAGAGAACCAGAAGATGTCAACTAG 1128 0.4468 MEGKWMINKIVVQVRQRNNWLFRRRTPRSSAHTKMSFVPSPPNKRLKAQDQEDSDQNLYLPPSFDDAQPDSCGICYANHGTSIRGEIDCCSHFFCFICIMEWSKHESRCPLCRQRFSTVRRPPKPGVFPSSRLVKVPIRDQVYHVHGNITTGPVDPYSETRCSVCKGEEDESFLLLCDLCDTASHTYCVGLGYVVPEGDWFCQDCSVSKEISDNNNVDHQGDIPTAEPSVTILDILRESRPSPLVTPLPDRMNRNKDRNRDMSVIAPLPDRVNRNKDRNHDITARTLRRCRNVQSNIQALRENWNALRNGSLRFSSTASESGVRRVKQQNSDSLHRRKSDQLHSSAASTSLQQSIIQSSRPSNNISNEREPEDVN 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g0758 375 MobiDBLite consensus disorder prediction 343 365 - -
Lele20g0758 375 MobiDBLite consensus disorder prediction 243 263 - -
Lele20g0758 375 MobiDBLite consensus disorder prediction 25 52 - -
Lele20g0758 375 ProSiteProfiles Zinc finger PHD-type profile. 159 208 IPR019787 -
Lele20g0758 375 PANTHER F18C1.6 PROTEIN 47 369 - -
Lele20g0758 375 Pfam Ring finger domain 70 113 IPR001841 -
Lele20g0758 375 MobiDBLite consensus disorder prediction 316 375 - -
Lele20g0758 375 Pfam PHD-finger 161 207 IPR019787 -
Lele20g0758 375 SUPERFAMILY FYVE/PHD zinc finger 153 210 IPR011011 -
Lele20g0758 375 ProSiteProfiles Zinc finger RING-type profile. 72 113 IPR001841 -
Lele20g0758 375 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 43 121 IPR013083 -
Lele20g0758 375 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 150 220 IPR013083 -
Lele20g0758 375 ProSitePatterns Zinc finger RING-type signature. 90 99 IPR017907 -
Lele20g0758 375 SMART PHD_3 161 206 IPR001965 -
Lele20g0758 375 SUPERFAMILY RING/U-box 71 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g0758 Lele-ChrLele20 14521492 14522842 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g0758 134 212 C2H2 Transcription Factor Family AT3G01460 28.750 6.11e-10 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lele20g0758 PHD 1.8e-10 CL0390