Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g0744 ATGTCATCGGCGCCGTCGACGATTCTACAGCCGGAGCAGCAGCAACAAGCAGTTCCAGGAGAAGCGCAGATGCCGGCGATGACTACTCCGGAGACTGTACCGACCCCTAGTGCTTGGGAATCTTCTGGTTCTGTTGGTCCTTTCTTTGCTGTCATTTCTGTGCTGACTGTTCTCGCTGTTCTTTCCTGCTATTTGGGACGAAAATGGAACCCTAGGCCTATGACCCCTTTGGAGAGCATCGAGAATGACAACAGAAGCTGTTTTGGCTGGCTCAAGTTCTTGTGTCGCCCACGTATACCAACGCTGGTTCAAGTTAAGAACGTTAATAAGTCGCCGGAGATCATGGCGGCTTCTACTAATAAACACAGTGATGATGATTGTAAAGTTGAAGAAGGAGCGGTTGCTGCACAAAACCTTCACCCTCAGACATTAACCAAACCACGTCGGAGTTTCCAAGAAGGCTCATGGATTCCTTCAGACTCAGTACTTAGACACCTTACAGAATCATTGTCATACTCATATTCATTCGCGCCACAACAACTCGCTTCCCTTTCTTCTTCTACCTCCCAACATCACTGCGATTTCGCTTCATTCGTCTCAGATTTCTGCAGATCGATCACATTGAGATATATTGAGATGTCGTCAAAGCTTCTCCAAGTTGATCAGCTTAAGCAACTGAGGGAAGTTTTTGTCCGATTTGACATGGACTCCGACGGCAGCCTGACCGTCCTAGAGCTAGCGGCGCTTCTCCGATCGCTTGGCCTGAAGCCCACCGGAGATCAAATCCACGCGATGTTAGCCACCATGGACTCCAACGGCAATGGATCGGTGGAGTTCGATGAATTGGCGAAAGCGATATTGCCAGACTTGAGGAAAGAAGAGGTAATGGTGAATCAAGAGAAGCTTCTAGAGGTTTTCAAGTGCTTCGATCGCGACGGAAATGGGTACATATCGGCGGCGGAGTTAGCCAGAGCAATGGCCAAAATGGGCCAGCCTCTCACGTACAGAGAACTCACGCAAATGATCAAAGATGCCGATGAAGATGGCGACGGTGTGATTAGCTTCAGTGAGTTTGCCAATGTAATGGCCAAGTCTGCCTCTGATTTCTTTGGCCTTTCATCGCCATAA 1128 0.4885 MSSAPSTILQPEQQQQAVPGEAQMPAMTTPETVPTPSAWESSGSVGPFFAVISVLTVLAVLSCYLGRKWNPRPMTPLESIENDNRSCFGWLKFLCRPRIPTLVQVKNVNKSPEIMAASTNKHSDDDCKVEEGAVAAQNLHPQTLTKPRRSFQEGSWIPSDSVLRHLTESLSYSYSFAPQQLASLSSSTSQHHCDFASFVSDFCRSITLRYIEMSSKLLQVDQLKQLREVFVRFDMDSDGSLTVLELAALLRSLGLKPTGDQIHAMLATMDSNGNGSVEFDELAKAILPDLRKEEVMVNQEKLLEVFKCFDRDGNGYISAAELARAMAKMGQPLTYRELTQMIKDADEDGDGVISFSEFANVMAKSASDFFGLSSP 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g0744 375 ProSitePatterns EF-hand calcium-binding domain. 270 282 IPR018247 -
Lele20g0744 375 ProSiteProfiles EF-hand calcium-binding domain profile. 221 256 IPR002048 GO:0005509
Lele20g0744 375 SMART efh_1 301 329 IPR002048 GO:0005509
Lele20g0744 375 SMART efh_1 261 289 IPR002048 GO:0005509
Lele20g0744 375 SMART efh_1 337 365 IPR002048 GO:0005509
Lele20g0744 375 SMART efh_1 225 253 IPR002048 GO:0005509
Lele20g0744 375 SUPERFAMILY EF-hand 218 363 IPR011992 -
Lele20g0744 375 CDD EFh 301 363 IPR002048 GO:0005509
Lele20g0744 375 ProSiteProfiles EF-hand calcium-binding domain profile. 257 292 IPR002048 GO:0005509
Lele20g0744 375 PANTHER CALCIUM BINDING PROTEIN 298 362 - -
Lele20g0744 375 CDD EFh 225 286 IPR002048 GO:0005509
Lele20g0744 375 ProSitePatterns EF-hand calcium-binding domain. 310 322 IPR018247 -
Lele20g0744 375 FunFam Probable calcium-binding protein CML15 211 291 - -
Lele20g0744 375 ProSiteProfiles EF-hand calcium-binding domain profile. 297 332 IPR002048 GO:0005509
Lele20g0744 375 MobiDBLite consensus disorder prediction 1 21 - -
Lele20g0744 375 FunFam probable calcium-binding protein CML18 293 369 - -
Lele20g0744 375 ProSitePatterns EF-hand calcium-binding domain. 346 358 IPR018247 -
Lele20g0744 375 ProSiteProfiles EF-hand calcium-binding domain profile. 333 368 IPR002048 GO:0005509
Lele20g0744 375 Pfam EF-hand domain pair 224 286 IPR002048 GO:0005509
Lele20g0744 375 Pfam EF-hand domain pair 300 362 IPR002048 GO:0005509
Lele20g0744 375 ProSitePatterns EF-hand calcium-binding domain. 234 246 IPR018247 -
Lele20g0744 375 Gene3D - 292 370 - -
Lele20g0744 375 Gene3D - 176 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g0744 Lele-ChrLele20 14442768 14446879 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g0744 221 372 EF-hand Containing Proteins AT1G18530 76.316 2.55e-83 249
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele20g0744 20 14442768 14446879 Lele21g1974 21 26718368 26724709 CCT
Lele20g0744 20 14442768 14446879 Lele22g1937 22 24067879 24070693 CCT
Lele20g0744 20 14442768 14446879 Lele23g0040 23 251589 254497 CCT
Lele20g0744 20 14442768 14446879 Lele24g1885 24 23626888 23629676 CCT
Lele17g0853 17 19871543 19873578 Lele20g0744 20 14442768 14446879 hybridization
Lele18g0672 18 4046754 4049456 Lele20g0744 20 14442768 14446879 hybridization