Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g0741 ATGGATTCGATGGACATTGTTGGGAAATCAAAGGAAGACGCTTCCCTTCCTAAAGCAACTATGACAAAAATTATTAAAGAGATGTTGCCCCCTGATGTACGTGTTGCAAGAGATGCACAAGATCTATTGATTGAATGCTGTGTAGAGTTTATAAACCTTGTTTCATCAGAGTCCAATGAAGTCTGTAATAGAGACGATAGGCGGACAATTGCACCAGAGCATGTATTGAAGGCTTTACAGGTTCTTGGATTTAGTGAGTACATTGAGGAAGTCTATGCAGCATACGAGCAGCATAGGATTGAGACCATGCAGGACTCTTTAAGAGCTGGCAAGTGGAGCAATGGAGCTGAGATGACTGAGGAGGAAGCGTTACTGGAGCAGCAGAGGATGTTTGCAGAGGCGCGTGCTAGAATGAACGGTGGGGTCATTGCTCCCAAGCAGCCAGATGCTGACCAAACTTTAGATGGCTAA 471 0.448 MDSMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCNRDDRRTIAPEHVLKALQVLGFSEYIEEVYAAYEQHRIETMQDSLRAGKWSNGAEMTEEEALLEQQRMFAEARARMNGGVIAPKQPDADQTLDG 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g0741 156 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 14 79 IPR003958 -
Lele20g0741 156 SUPERFAMILY Histone-fold 12 142 IPR009072 GO:0046982
Lele20g0741 156 FunFam Negative cofactor 2 beta 6 142 - -
Lele20g0741 156 Gene3D Histone, subunit A 4 141 IPR009072 GO:0046982
Lele20g0741 156 PANTHER PROTEIN DR1 HOMOLOG 1 154 IPR044255 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g0741 Lele-ChrLele20 14417055 14420334 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g0741 1 152 CCAAT-DR1 Transcription Factor Family AT5G23090 83.766 2.79e-94 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Lele20g0741 CBFD_NFYB_HMF 2.5e-22 CL0012
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele17g0850 17 19842046 19847022 Lele20g0741 20 14417055 14420334 hybridization
Lele18g0676 18 4078530 4081921 Lele20g0741 20 14417055 14420334 hybridization