Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g0733 ATGTTTCCTTCGAACCCTTTTTCCTTTGACAGCAACCTAAACTCCACGCAACAAACCCTTCCTCCTCCTTTCTCCTTCCTTCACTTCCCTCCGCCTTCCTTTGAAGACCACGAAATCTTCCTTCCACAACAACCAAACCACCATCATGACCACCTCTTACTTCATCATCAATCACAACCTCTAGCTGAAGCAGCAAGTGCCAGCATGGGTGTTTCGAACAAGAATGAGCAGATCCCGGTAAGGAATAAGAGGATTTGCAAGAGAGATAGGCACAGCAAGATCAAGACGGCTAAAGGGCTAAGAGATCGGAGAATGAGACTATCTCTGGAAGTAGCCAAGAGATTCTTTGGTCTTCAAGACATTCTAGGCTTTGACAAGGCCAGCAAAACCGTTGAGTGGCTGCTGAATCAGTCAAAGGACGAGATCAAACAGCTAGCAATAGACAAGAATTACAATAATTGCAGTGGGAATGGTGGGGTTAAGAGTGCATCTTCAACTTCAGAGTGTGAAGGGGTGTCAGGTTTGGACGAGGTGGCATTAAGTGGAATGAATCAAGAGCAAGAGGGAGATCAACGATCCTTACTGGTGAAGAGAAGGACAAAAAATACAAGAAAGAGTGCACTATTTGATCCTTTTATTGCAAGGGAGTCAAGGGAAAAGGCTAGAGAGAGGGCAAGAGAGAGGACCAAGAAGAAGATGAACATGAAAAGTCGCCAATCATTTCCAGCAGCTGATAACACCACCAACCATAATTGTGACCTCACCCAATTTGGTTCATGGAATCCGTTTGAAACAGGAGAAAAGGGGAATAATCCCTCCTTGGAGGTGATGGCCGAGGCTGCTGAAGATGAACGAAGCTCTCAGGCTAAGGATGATGATTCCTTGGCGGTTAATATGGGCAAATGGAGCCCATCCATGATATTCAACTCATTGAGTACTTCATCTACATTTGTACAAGATCATCATCAATTTGCGGAATTTCAGCCATTGGCAAAACTTTGGGAGGCCTACTACAATCACATGGTGATCTAA 1032 0.4477 MFPSNPFSFDSNLNSTQQTLPPPFSFLHFPPPSFEDHEIFLPQQPNHHHDHLLLHHQSQPLAEAASASMGVSNKNEQIPVRNKRICKRDRHSKIKTAKGLRDRRMRLSLEVAKRFFGLQDILGFDKASKTVEWLLNQSKDEIKQLAIDKNYNNCSGNGGVKSASSTSECEGVSGLDEVALSGMNQEQEGDQRSLLVKRRTKNTRKSALFDPFIARESREKARERARERTKKKMNMKSRQSFPAADNTTNHNCDLTQFGSWNPFETGEKGNNPSLEVMAEAAEDERSSQAKDDDSLAVNMGKWSPSMIFNSLSTSSTFVQDHHQFAEFQPLAKLWEAYYNHMVI 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g0733 343 MobiDBLite consensus disorder prediction 211 250 - -
Lele20g0733 343 Pfam TCP family transcription factor 87 236 IPR017887 -
Lele20g0733 343 ProSiteProfiles R domain profile. 215 232 IPR017888 -
Lele20g0733 343 MobiDBLite consensus disorder prediction 211 230 - -
Lele20g0733 343 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 61 335 IPR005333 GO:0003700
Lele20g0733 343 ProSiteProfiles TCP domain profile. 87 145 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g0733 Lele-ChrLele20 14348451 14349734 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g0733 83 229 TCP Transcription Factor Family AT3G18550 46.250 6.24e-32 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Lele20g0733 TCP 3.4e-46 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele17g0840 17 19776228 19777514 Lele20g0733 20 14348451 14349734 hybridization
Lele18g0684 18 4146641 4147937 Lele20g0733 20 14348451 14349734 hybridization