Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g0720 ATGGCTTCTTCGTCTGAACTAAGTCTGGATTGCAAACCCCACAGCTATTCTTTGCTTCTGAAATCATTTGGAGATCAAGCAGATCATACCTACAAGCTTGAGGAGTTCCTTTCTCGCCTCGAGGAAGAACGTTTCAAGATCGATGCCTTCAAGCGCGAGCTTCCTCTCTGCATGCAGCTTCTTACCAACGCTATGGAGGCCTCAAGGCAGCAACTTCAGGCCTACAGAGCAAATCAAGGCACGACGACGAGGCCAGTGCTGGAAGAATTCATACCCATCAAGCAATCAACCCCTGAGAGCTCTGAGAAGGCATCCAACGTATCAGACAAGGCAAATTGGATGACATCTGCTCAATTATGGAGCCAAGCAAATGAAGGAACCAAGCCCCAATCCACAATCACGTCCCCAAAAGAAGCTGATCTTGGTTTCAGTGTGAGCCGTAAGCTTGCTCTTGACAACAAACAGAGAAATGGTGGAGCCTTCCTACCATTCTCAAAAGAACGAAACTCATCATCATGCCAAAATGGCTCCACCGCATTACGGGTCATCCCAGAGTTGGCCCTCGCATCTTCTGAGAAAGAGATGGAGGATAATAAGAAATGCACAGAACCAGAAAATGCAGTGTCATGTCCAAAAAGGGAAAATTCTGGTAAAGCCGCCGGAGGCAACGGTACTGGGGTAGTGGTCACTGAGCAAGGAAAAGGAGCCCCGGTTTCATCTGATCCACAAACAACAACAGCCACCACCAACACAACTAACCAAACTAATAGGAAGGCAAGAAGATGCTGGTCACCGGACCTGCACCGCCGATTTGTAAATGCTCTTCAGATGCTAGGTGGATCTCAAGTGGCTACCCCAAAACAGATAAGGGAGCTGATGAAGGTTGACGGTTTGACCAATGATGAAGTTAAAAGCCATCTCCAGAAATATAGGCTTCATACACGACGTCCCAGTCCAAGCCCACAAGCAGCCGGGTCACCCGCACCTCAGCTCGTTGTCCTAGGAGGAATCTGGGTCCCACCCGAGTACGCTGCCGCCGCTGCTCACACTGGCGCACCTGCCATCTATAGCACACACCCTACCTCCCACGCGCCGCTGCCGCCTCCCCACTACTGTACCGCAACGCCAGTGCACCAAGAATTCTACGCTGCCACCGCGGCTCCACAGCCAGCTCCGCCGCACTACCAAACGCTGCTCCATCACCATCTGCAGATGTACAAAACGAACTCGCACCAGGGCTCGCCGGAATCGGAGATGCGAGGAGGGGGAGAGAGGTCGGAGAGTATAGAGGACGGGAAGTCGGAGAGCAGCAGCTGGAAGGGAGAGAGCGGGGAGAACGAAGGAAAGAGGAAAGGACTGGCGGCACTGAGAGAAGAAGGAGAAGAGAGTAGTCGGAGCGAGACGACTCTGAAATTCTAG 1419 0.5215 MASSSELSLDCKPHSYSLLLKSFGDQADHTYKLEEFLSRLEEERFKIDAFKRELPLCMQLLTNAMEASRQQLQAYRANQGTTTRPVLEEFIPIKQSTPESSEKASNVSDKANWMTSAQLWSQANEGTKPQSTITSPKEADLGFSVSRKLALDNKQRNGGAFLPFSKERNSSSCQNGSTALRVIPELALASSEKEMEDNKKCTEPENAVSCPKRENSGKAAGGNGTGVVVTEQGKGAPVSSDPQTTTATTNTTNQTNRKARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSPSPQAAGSPAPQLVVLGGIWVPPEYAAAAAHTGAPAIYSTHPTSHAPLPPPHYCTATPVHQEFYAATAAPQPAPPHYQTLLHHHLQMYKTNSHQGSPESEMRGGGERSESIEDGKSESSSWKGESGENEGKRKGLAALREEGEESSRSETTLKF 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g0720 472 MobiDBLite consensus disorder prediction 236 259 - -
Lele20g0720 472 Coils Coil 58 78 - -
Lele20g0720 472 MobiDBLite consensus disorder prediction 408 472 - -
Lele20g0720 472 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 258 313 IPR006447 GO:0003677
Lele20g0720 472 Gene3D - 257 315 - -
Lele20g0720 472 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 255 315 IPR017930 -
Lele20g0720 472 Pfam Myb-like DNA-binding domain 260 311 IPR001005 -
Lele20g0720 472 MobiDBLite consensus disorder prediction 194 259 - -
Lele20g0720 472 FunFam Myb family transcription factor 257 315 - -
Lele20g0720 472 SUPERFAMILY Homeodomain-like 256 316 IPR009057 -
Lele20g0720 472 MobiDBLite consensus disorder prediction 418 472 - -
Lele20g0720 472 Coils Coil 33 53 - -
Lele20g0720 472 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 20 440 IPR044787 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g0720 Lele-ChrLele20 14234351 14236564 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g0720 1 472 G2-like Transcription Factor Family AT2G03500 51.521 6.40e-137 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lele20g0720 Myb_DNA-binding 1e-05 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g1224 21 15264762 15285512 Lele20g0720 20 14234351 14236564 CCT
Lele17g0826 17 19665969 19668102 Lele20g0720 20 14234351 14236564 hybridization
Lele18g0699 18 4260078 4262287 Lele20g0720 20 14234351 14236564 hybridization