Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g0719 ATGACGATTGACGACGAGAGCTCCATATATGTTGGAGGTCTTCCCTACGATGCCACCGAAGATACCATTCGTACCGTCTTTGATCTGTATGGTGCCATTCTTGATGTCAAGATTATTAATGATGTCCGGACTAGGGGAAAGTGCTATTGTTTTGTAACTTTCACAAATCCTCGATCTGCAATTGATGCGATCAATGACATGAATGGAAGGACCATTGATGGGCGTATGGTTAAAGTAAATGGGGTGAGGACTCGGGGTGGAAGATCAAATTTTGGTAGGGAACTTATTCAGCATGATCATGATACTGATAGGAATGGAGATTGGGATTGTGGTAGACATCGAGACCAAGATTATAATCATGACAGGGGCAGGCACAGGAATCGAAATAGTGATTGGTCTCGAGAGCGTGATAGATCTCGAGAGCATGATAGATCTGGAGACTTTGAGCATGGAGGGGATAGAAGATATGAGCACGCACATTATCATGATCTAGAAAGAGAACCTTTGCATGTTAAAGATCGAAGTCAAGAGAGACATCAAGCAGATGATGAACAAGAACACAGTAAACCACTTGGTCAAGCTATACAAAGAGACTATAACCTAGATTATGATACAGACAAGAAGATGGACAGGACTTATGATCCTGACAGAAGTTTTGATGGGGATAGAAATGAACCCTCAAGGAGAAACAATGGATTTACAAAACAACCTAACATGGATTTTTCATCAGACTCGAATGGTTACCACAATGACGAGATTGCAGATCAATTAGATAGGTCAACTCAAAGGCTTGGTCAACTGAAAAATGAGGTCTCTCAGTTGGAAGAGAAGTTACAAGAGAAACGACATCTTGTTATGGATTTGCAAAAGCAATCTAGGAAACTGGAGGATGCATTAATTAATGCAAAGAAACATTCTTCATATCGTCAGATGCAGTTGACCAAGCTGCAAAAATGTTTTCTGGAAGTGAAAGATTACACAGAGCGACTAAAAACCTGTGAAAAAGAACTTAAGACTATGGTTGATACGGCAATGTTAGAGAGTGATGGCGATGGCGAAGCTGTTGGCTTAAAGGATGTACAAATGATAAGTGGATATGTATGA 1104 0.4049 MTIDDESSIYVGGLPYDATEDTIRTVFDLYGAILDVKIINDVRTRGKCYCFVTFTNPRSAIDAINDMNGRTIDGRMVKVNGVRTRGGRSNFGRELIQHDHDTDRNGDWDCGRHRDQDYNHDRGRHRNRNSDWSRERDRSREHDRSGDFEHGGDRRYEHAHYHDLEREPLHVKDRSQERHQADDEQEHSKPLGQAIQRDYNLDYDTDKKMDRTYDPDRSFDGDRNEPSRRNNGFTKQPNMDFSSDSNGYHNDEIADQLDRSTQRLGQLKNEVSQLEEKLQEKRHLVMDLQKQSRKLEDALINAKKHSSYRQMQLTKLQKCFLEVKDYTERLKTCEKELKTMVDTAMLESDGDGEAVGLKDVQMISGYV 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g0719 367 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 77 IPR000504 GO:0003723
Lele20g0719 367 Coils Coil 316 343 - -
Lele20g0719 367 MobiDBLite consensus disorder prediction 230 250 - -
Lele20g0719 367 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 2 99 - -
Lele20g0719 367 SMART rrm1_1 8 80 IPR000504 GO:0003723
Lele20g0719 367 SUPERFAMILY RNA-binding domain, RBD 4 109 IPR035979 GO:0003676
Lele20g0719 367 MobiDBLite consensus disorder prediction 83 251 - -
Lele20g0719 367 PANTHER GEO13361P1-RELATED 6 192 - -
Lele20g0719 367 Gene3D - 2 96 IPR012677 -
Lele20g0719 367 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 84 IPR000504 GO:0003723
Lele20g0719 367 Coils Coil 250 305 - -
Lele20g0719 367 MobiDBLite consensus disorder prediction 200 229 - -
Lele20g0719 367 Pfam DivIVA protein 239 306 IPR007793 -
Lele20g0719 367 MobiDBLite consensus disorder prediction 92 191 - -
Lele20g0719 367 CDD RRM_SF 9 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g0719 Lele-ChrLele20 14229260 14232567 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g0719 7 73 Eukaryotic Initiation Factors Gene Family AT2G23350 32.836 3.73e-07 50.1