Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g0718 ATGGCTAAGCAACAGGTGAGCTTCTTGGTTGTGTGGAATGTTGGAATCATTGCACTAATATGTGTTGCTTTTGAGTTTGATGGGATTTATCATTTTGGTTCATTTGATGGGCAAGAACACACACGGAGGGGGAATTCAGAAAGGACAAGAAGTAGCTACGTGAAAAGAAAAGAAAAGAAGAAAAGCTTTGTTGCAGCAGAGAGAGATAAATGGCAGGCCAGCCTTCAGCTGCAGACACCACTTCTCTCTTCTTTTAGACATCAGCAGCAGAAAGAAGAAGAAGGAAGCTCATATAACATTAAAAGCTCAGAGATTATATATCCTTCTGCTAAACATTGCGTAAAGCACAAGGATCCAGAAGAAGATCAAGTTAAATCCAGAATGAAGCCTATGCAGAAACAAACGGATCGTAGAAGAAGATGTAGGAGAAGAAGCCATTGCAAACCAGAGATATTAAAAGAGAAAGGGGTTGATTTAGAACTGAAGAATCCTTATTATGCTACTTCTTGCAATAATAATAGCCTTGAGTTCACACATAGGCCTGGTTTTGGCCAGCTTGGGACTAAGTGTTTGGTCAAAGCTAACCACTTTCTTGCAGATATATCAGCATCTGACTTGAGCCATTACAGTGTTAAGATAACACCAGAAGTTACTTCTCGTAAAATAAGCAAAGCTATCATTGCTGAGTTGGTGAGGCTTCATAGAAACACAGACTTGGGGATGAGGCTCCCAGTTTATGATGGGGGAAGGAATCTTTACACCGCTGGTTTGCTTCCTTTTACACACAAAGAATTCACCATAACATTGACTGAAGAAGATGAGGGAACAGGCAATACCTGGGAAAGAGAGTTTAGAGTGAAAATCAAGTTCGCAACTCGAGTTAGCATGAATCAACTACGAGAGCTTCTCAGTGGGAAACAAGTGAACACCCCACAAGAAGCACTTAACATCATTGATATTTTATTAAGGGAGCTCGCAGCTCAAAGTTATGTGTCAGTTGGGAGGTTTCTCTATTCTGCTGATATAAAAAAACCACAGCAACTAGGTGGTGGTTTGGAATCATGGCGTGGCTTCTACCAGAGTATAAGGCCTACTCAGATGGGATTGTCACTAAACATTGACATGTCATCAATGGCGTTTATAGAACCACTCCCTGTCATTGATTTTGTTGCCCAAATTCTGGGTAAAGATGTGCATTCTAAACCATTGTCAGATGCAGATCGTGTCAAGATTAAGAAAGCCTTACGAGGTGTGAAAGTTGAAGTTACTCATAGAGGAAATGTTCGAAGGAAGTACAGGATTTCAGGACTCACATCACAGCCTACAAGAGAGCTCATATTCCCTCTTGATGAGCAAATGAACATGAAATCAGTAGTTGATTACTTCCGGGAGATGTATGGTTACACAATTAAGTATTCTCATCTACCATGCCTGCAAGTAGGGAACGAAAAGAAGGTGAATTATTTGCCAATGGAGGCATGCAAGATAGTTGGAGGCCAGAGATATACAAAAGGGCTAAATGAGAAGCAGATAACTTCTCTGCTTAAAGTTTCATGTCAGAGACCTCGTGAACAAGAGCTAGATATTCTACAGACAGTTGAGCAAAATGATTATGAGAATAACCCTTATGCAAAAGAGTTTGGTATCGGCATAGACGACAAGCTTGCATCTGTCGAAGCCCGGGTTCTGCCTGCTCCATGGTTGAAATATCATGATACAGGAAGGGAGAATGAGTACTTGCCACAAGTTGGTCAGTGGAATATGATGAACAAGAAAGTTATTAATGGAAGCATAGTAAGATATTGGGCATGTATCAATTTCTCTCGTAGTGTTCAAGAAAGCACGGCTCGGGGCTTTTGCCAACAGTTGGTTCAGATGTGCCAAATCTCAGGCATGGAATTCAGTCAGGAGCCAGTAATTCCTATACATACAGCAAGACCAGATCAGGTTAAAAAGGCCTTGAAGTACATACACTCTTCTGCTTTGGACAAACTTGAAGGGAAAGAACTTGAGTTGCTCATTGCCATTCTTCCAGACAATAACGGCTCTCTCTACGGTGATCTCAAAAGGATCTGTGAAACAGATCTGGGGTTGATTTCTCAGTGCTGTCTCACAAAACACGTCTTCAAGATTAATAGACAATACCTGGCAAATCTGGCACTTAAAATCAATGTCAAGATGGGAGGAAGAAACACAGTGCTTTTGGATGCGTTGAGTTGGAGGATTCCATTGGTTAGTGACATTCCAACAATAATATTTGGAGCTGATGTAACTCATCCAGAATCTGGAGAAGATTCTTCTCCTTCCATTGCTGCTGTTGTGGCCTCACAGGACTGGCCTGAAGTAACAAAGTATGCAGGACTTGTGTGTGCTCAGCCTCATCGCGAAGAACTCATTCAAGACCTTTTCAAGTGTTGGAAAGATCCTCAGCGAGGCGTAGTTTATGGTGGCATGATTAGTGAGCTCTTACTCTCATTTAAGAAGGCAACTGGACAGAAACCATTGAGGATAATATTTTACAGGGATGGGGTAAGTGAAGGACAATTCTACCAGGTTTTGTTGTATGAGCTTGATGCTATCCGCAAGGCTTGTGCATCACTGGAACCTAGTTACCAACCTCCAGTAACATTTGTGGTGGTTCAAAAGAGGCATCACACAAGGCTCTTCTCAAGCAATCATGATGACAGAAATAGCACTGACAGGAGTGGCAACATCTTACCTGGTACGGTGGTGGATTCTAAGATCTGTCATCCCACAGAATTTGACTTTTATTTATGCAGTCATGCAGGAATACAGGGGACGAGTAGACCAGCTCACTATCATGTCCTGTGGGACGAGAACAAATTCACTGCAGACGAGATTCAATCTCTAACCAACAACTTATGCTACACGTATGCAAGATGCACAAGATCTGTTTCCGTAGTGCCTCCAGCATACTATGCTCATCTAGCAGCTTACAGAGCTCGATTCTACATGGAACCAGATGTGCATGAGAATGCTGCTAAAGCATCACGTGGGGCAAGATCAAAGGATGGCTCAGTTGTTCGGCCATTGCCAGCTCTCAAAGACAAGGTCAAGAATGTCATGTTTTACTGTTGA 3099 0.4214 MAKQQVSFLVVWNVGIIALICVAFEFDGIYHFGSFDGQEHTRRGNSERTRSSYVKRKEKKKSFVAAERDKWQASLQLQTPLLSSFRHQQQKEEEGSSYNIKSSEIIYPSAKHCVKHKDPEEDQVKSRMKPMQKQTDRRRRCRRRSHCKPEILKEKGVDLELKNPYYATSCNNNSLEFTHRPGFGQLGTKCLVKANHFLADISASDLSHYSVKITPEVTSRKISKAIIAELVRLHRNTDLGMRLPVYDGGRNLYTAGLLPFTHKEFTITLTEEDEGTGNTWEREFRVKIKFATRVSMNQLRELLSGKQVNTPQEALNIIDILLRELAAQSYVSVGRFLYSADIKKPQQLGGGLESWRGFYQSIRPTQMGLSLNIDMSSMAFIEPLPVIDFVAQILGKDVHSKPLSDADRVKIKKALRGVKVEVTHRGNVRRKYRISGLTSQPTRELIFPLDEQMNMKSVVDYFREMYGYTIKYSHLPCLQVGNEKKVNYLPMEACKIVGGQRYTKGLNEKQITSLLKVSCQRPREQELDILQTVEQNDYENNPYAKEFGIGIDDKLASVEARVLPAPWLKYHDTGRENEYLPQVGQWNMMNKKVINGSIVRYWACINFSRSVQESTARGFCQQLVQMCQISGMEFSQEPVIPIHTARPDQVKKALKYIHSSALDKLEGKELELLIAILPDNNGSLYGDLKRICETDLGLISQCCLTKHVFKINRQYLANLALKINVKMGGRNTVLLDALSWRIPLVSDIPTIIFGADVTHPESGEDSSPSIAAVVASQDWPEVTKYAGLVCAQPHREELIQDLFKCWKDPQRGVVYGGMISELLLSFKKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPSYQPPVTFVVVQKRHHTRLFSSNHDDRNSTDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADEIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAYRARFYMEPDVHENAAKASRGARSKDGSVVRPLPALKDKVKNVMFYC 1032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g0718 1032 Pfam N-terminal domain of argonaute 189 322 IPR032474 -
Lele20g0718 1032 CDD Piwi_ago-like 542 992 IPR045246 -
Lele20g0718 1032 MobiDBLite consensus disorder prediction 116 144 - -
Lele20g0718 1032 Gene3D paz domain 378 502 - -
Lele20g0718 1032 ProSiteProfiles Piwi domain profile. 672 993 IPR003165 GO:0003676
Lele20g0718 1032 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 184 994 - -
Lele20g0718 1032 Pfam Argonaute linker 1 domain 332 381 IPR014811 -
Lele20g0718 1032 SUPERFAMILY Ribonuclease H-like 660 994 IPR012337 -
Lele20g0718 1032 ProSiteProfiles PAZ domain profile. 384 498 IPR003100 GO:0005515
Lele20g0718 1032 Pfam Piwi domain 673 992 IPR003165 GO:0003676
Lele20g0718 1032 CDD PAZ_argonaute_like 383 497 - -
Lele20g0718 1032 Pfam Argonaute linker 2 domain 528 570 IPR032472 -
Lele20g0718 1032 Pfam Mid domain of argonaute 581 658 IPR032473 -
Lele20g0718 1032 FunFam protein argonaute 10-like 741 1032 - -
Lele20g0718 1032 Gene3D - 562 735 - -
Lele20g0718 1032 FunFam Argonaute 10 562 735 - -
Lele20g0718 1032 Pfam PAZ domain 388 514 IPR003100 GO:0005515
Lele20g0718 1032 FunFam Protein argonaute-2 377 503 - -
Lele20g0718 1032 Gene3D - 741 1032 IPR036397 GO:0003676
Lele20g0718 1032 SMART DUF1785_2 331 383 IPR014811 -
Lele20g0718 1032 MobiDBLite consensus disorder prediction 116 131 - -
Lele20g0718 1032 SMART Piwi_a_2 672 993 IPR003165 GO:0003676
Lele20g0718 1032 SUPERFAMILY PAZ domain 379 538 IPR036085 GO:0005515
Lele20g0718 1032 SMART PAZ_2_a_3 388 520 IPR003100 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g0718 Lele-ChrLele20 14212440 14226804 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g0718 177 1032 Eukaryotic Initiation Factors Gene Family AT5G43810 74.913 0.0 1394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele17g0824 17 19642480 19648338 Lele20g0718 20 14212440 14226804 hybridization
Lele18g0701 18 4277462 4283986 Lele20g0718 20 14212440 14226804 hybridization