Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g0694 ATGAGTTTTCCCGATCATCACCCTGGCTTCATGCTGTCGCCGTTACGATTTGCGGCGGATGACGATTCCAATGGAAGGTGGCCGCAATTCCCAATGAACAACGAATTTTTCGATTCACATTCAACATTTGATCAGCTTCCTCCGTTCAAGAGGCCCAGAACATCCGAAAGCAATCACTTCGATCCCTCGCCATTACCGCCGCCGCCCATGAATTCCTGGATGCGCCACCCGCAAAATCCTCCAACAAACAGAGGAACGAGCCACATTTTTTATAAGACTCGCCTGTGTGCGAAATTCAGAATGGGTGCATGTAGGAATGGCGAGAATTGCAATTTTGCTCATGGCAATGAGGACGTGAGGCAGCCACCCCCAAATTGGCAGGAACTTATTGGCTTACGCGATGAAGACCGGCCATCTGCAAATTGGGACGATGACCAGAAAATCATACATAAGATGAAGCTTTGCAAGAAGTATTACAATGGTGAGGAATGCCCTTATGGTGAAAAGTGCAATTTTCTTCATGAAGACCCGTCCAAGTTCAGGGATGATGCAGGGAGGTGGAGGGAGAGCTCAGCTATAAGCCTTGTGTCTAATGGATCTCCAAAGTCGCGCGTCAATGGCCCTAATTATTCAGACAATAATAAGACTGTCAGCACCAGTTGTGATGGTTTTAGAACAAATGGGAAGGCTCCTTTCTGGAAGACTAGGTTATGTAGTAAGTGGGAGACAACAGGACAGTGCCCTTTCGGCGATAAATGTCATTTTGCCCATGGACAAGCAGAGTTACAAGTGTCTGGTGGACGCAGTGAGGCAGAAGCTATAGGATCTGCATCAATTCCTGTGAATGATGTGTCTCCTATCAATACTGCTGCAAGTATACTTGATTCAAAGGAAGAGGAGCAGAAAAAGAAGAATTTGGTCAAGTGGAAAATAAACAAGAAGGTCAATCTAATTTATGCTGATTGGCTCGATGACCTTCCATTGCCAAGAGCTTTCTCACCACTCAAGGCGTCCCTCACCACCATGTCCATTAACTTGCACCCTCGTGCCTACGCTGACAATACACCATTATCCAGATTCTCCAAACTTCAACTTTCACCCACCGGAGCTCTTGAATCCCTGAAATTTCAACTTTCAGAGTCCACTCAACCTTCATCCACCCTACGTTTCCAGGTCTTGCCTTTCAGAAATGGGAGACCCTTAGCCTCTTCTTCTTCGACAGCTCACTCCGGAGATTCCCAGCAGATTTGGCATCTGGGTTGGATCAATTTGGGTGATCTCGAGGTGCTCTTGGAAAGTTCTGGTGGACAATTGAACGGAGACTGGGCTCGTGTTCAGAAGACGACGTCGTTTACTGGGCAATTGACGTTTCTTCTGAGCAGGGCTTGCTGCCTAAATTAG 1401 0.4704 MSFPDHHPGFMLSPLRFAADDDSNGRWPQFPMNNEFFDSHSTFDQLPPFKRPRTSESNHFDPSPLPPPPMNSWMRHPQNPPTNRGTSHIFYKTRLCAKFRMGACRNGENCNFAHGNEDVRQPPPNWQELIGLRDEDRPSANWDDDQKIIHKMKLCKKYYNGEECPYGEKCNFLHEDPSKFRDDAGRWRESSAISLVSNGSPKSRVNGPNYSDNNKTVSTSCDGFRTNGKAPFWKTRLCSKWETTGQCPFGDKCHFAHGQAELQVSGGRSEAEAIGSASIPVNDVSPINTAASILDSKEEEQKKKNLVKWKINKKVNLIYADWLDDLPLPRAFSPLKASLTTMSINLHPRAYADNTPLSRFSKLQLSPTGALESLKFQLSESTQPSSTLRFQVLPFRNGRPLASSSSTAHSGDSQQIWHLGWINLGDLEVLLESSGGQLNGDWARVQKTTSFTGQLTFLLSRACCLN 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g0694 466 FunFam Zinc finger CCCH domain-containing protein 85 121 - -
Lele20g0694 466 PANTHER CCCH ZINC FINGER/TIS11-RELATED 29 181 IPR045877 GO:0003729
Lele20g0694 466 SUPERFAMILY CCCH zinc finger 88 121 IPR036855 GO:0046872
Lele20g0694 466 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 91 115 IPR000571 GO:0046872
Lele20g0694 466 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 233 259 IPR000571 GO:0046872
Lele20g0694 466 Gene3D - 226 264 - -
Lele20g0694 466 Gene3D - 147 178 - -
Lele20g0694 466 Gene3D - 83 121 - -
Lele20g0694 466 ProSiteProfiles Zinc finger C3H1-type profile. 149 177 IPR000571 GO:0046872
Lele20g0694 466 SUPERFAMILY CCCH zinc finger 149 176 IPR036855 GO:0046872
Lele20g0694 466 MobiDBLite consensus disorder prediction 61 75 - -
Lele20g0694 466 FunFam Zinc finger CCCH domain-containing protein 39 146 178 - -
Lele20g0694 466 ProSiteProfiles Zinc finger C3H1-type profile. 232 260 IPR000571 GO:0046872
Lele20g0694 466 SUPERFAMILY CCCH zinc finger 231 263 IPR036855 GO:0046872
Lele20g0694 466 FunFam Zinc finger CCCH domain-containing protein 227 264 - -
Lele20g0694 466 MobiDBLite consensus disorder prediction 41 86 - -
Lele20g0694 466 Pfam CCCH-type zinc finger 153 174 IPR041367 -
Lele20g0694 466 SMART c3hfinal6 90 116 IPR000571 GO:0046872
Lele20g0694 466 SMART c3hfinal6 149 176 IPR000571 GO:0046872
Lele20g0694 466 SMART c3hfinal6 232 259 IPR000571 GO:0046872
Lele20g0694 466 ProSiteProfiles Zinc finger C3H1-type profile. 90 117 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g0694 Lele-ChrLele20 14072589 14076463 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g0694 232 263 C3H Transcription Factor Family AT1G68200 59.375 1.22e-07 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele20g0694 zf-CCCH 1.9e-11 CL0537