Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g0630 ATGGGTAACAAAAAGAAACAAGTTGGAGAAAAATCAAGTGATGAGGATACTGAGTTATTCATTTCAATGTCTAAAGAGTTTAAGAGTGAAGGCAACAAGCTGTTCCAAAAGAAAGATCATGAAGAAGCCATCTTAAGATATGAGAAAGCCATTAATTTGCTACCAAGAAATCATATTGATGTGTCTTGTCTGCGGTGTAACATAGCCGCATGCTACATGCAGATGGGACTCTCCAAGTACCCGAATGCGATTTATGAATGCGACTTAGCTCTTGAAGTTACTCCAAAGTACAGTAAAGCCCTTTTGAAAAGGGCACGGTGCTATGAGGCTTTAAATAGGCTGGATTTAGCTCTGGTAGATGCTACTACTGTGCTGAAGAAGGAACCAAACAATATTATGGCACTGGAAATTTCGGAGGAGGCGAAGAATGCACTCTTGGACAAGGGATTGACAGCATCTGACATAGCAATATTATTGCCTTCTGATCATGCTGAATCTCCTTGTGCGCCTCCAAAAGTAGTAAAAGAGAAGAAACACGAGAGCAAAAAGGTTGAGTCAGTGACTGTTGAACAGCCCGCTGAGGTGAAGTTGGAAGACAAGAAGGTTGAGGACAGTGTTGAGCAGAAGAAGGCTGTGAAGAAGTCAAAAGAGAAATTGGAAGACAAGAAGGCAGAGGACAGTGTTGAGCAGAAGAAGGCTGTGAAAAAATCTGAAGAGAAGTTGGAAGTCAATAAGGCAGAGGGCAGTGTTGAGAAGAATAAGGCTGTGAAAAAATCTGAAGAGAAGCTGGAAGACAAGAAGGTGGAGGACGGTATTGAGCAGAAGAAGGCTGTGAACAAATCCAAAAAGAAGGCGGCGAAGGAAAAGATTAATGACAAAAAGGCTGATATAAAGGAGGTTATTGAGGAAAAATTTAATAGTAGAAAGGAAGATGCAGCTAAGAAAACGGTGAATTTCGTTTTTGGTGAGGACATTAGATTTGCAGAATTGCAAGTAAATTGCAGCCTCCAGCATCTAAGGGAAGTTGTCAGCGAGCGATTTCCAAGTGCAGGAGCAGTTCTTGTCAAATACAGGGATCAAGAAGGTGATTTAGTCACAATCACTTCTGATGAAGAATTGAGATGGGCTCAAACATCAGCAGGGTCAGAGAGTTCTATCCGCCTATGCATAGTGGATACTGATCCTGAGAAGGATCCATTGTTTGAGAAAACTAATGAAAAGAAGCCAGTCATTAATAATAATGCACTTCAGAGAGAAAAGGAAAGAAAAGGAAAGGAAATGATTAGATCATCATCTTGCATTGAGGATTGGATAATCCAGTTTGCCCAACTGTTCAAGAACTATGTTGGAATTGAATCTGACAGGTATTTAGATTTTCATGAACTTGGAATGAAACTCTATTATGAAGCTATGGAGGAGACAGTTACTAGTGAAGAAGCACAAAGCCTGTTTGACATGGCAGGAGCTAAGTTCCAAGAAATGGCCGCATTAGCGTTGTTCAACTGGGGAAATGTTCACATGTCCAGGGCAAGGAAGAAAGTGAACTTAACAGAAGTAACTTCGAAAGAGAATTTGCATGAACAGTTAAAGAATTCATATGAATGGGTGCAGCAAGAATATAGAAGAGGGGGAGAAAAATATGAAGCAGCCATTAAAATCAAACCCAATTTTTATGAAGGCTTCCTGGCACTAGGGCAACAGCAATTTGAGCAAGCAAAACTTTCTTGGTATTATGCAATTAACACAAATATTGACTTACCAATATGGCAAATGTACAACAATGCTGAGGAAAACATGGAGAAAGGAATGCAGATATGGGAAGAATCTGAAAAGAAATGCTTGAATGAAGATTCTAAATCAAAGGATATCGAATTCCATTTACAGAACATGGGATTGGATTCCCTATTGCAAAATATATCATCAGAAGAAATAGCAGCTCGCGCAGCAACTTTGAGGTCTCAAATAAATATCCTTTACGGCACCATGCTATATGAGCGCTCAATTATGGAATTCAAATTAGGGTTACCAGTATGGCATGCATGTCTGGAAGTTGCACTTGAGAAGTTTGAACTTGCTGGAGCTTCTCCAGCAGATATAACTCTAATGGTGAAGAACCACTCTTCAAATAATACTTCTGCTGAAGGTCTAGGTTTCAACGTTGATAAAATAGTACAAGCATGGAATGACATACAAGAAGCTAGAAGGTGGCAGAGTCGAGTTTCGTCATATCATTTGGAACCCTTATTCAGAAGGCGAGCTTAA 2262 0.3992 MGNKKKQVGEKSSDEDTELFISMSKEFKSEGNKLFQKKDHEEAILRYEKAINLLPRNHIDVSCLRCNIAACYMQMGLSKYPNAIYECDLALEVTPKYSKALLKRARCYEALNRLDLALVDATTVLKKEPNNIMALEISEEAKNALLDKGLTASDIAILLPSDHAESPCAPPKVVKEKKHESKKVESVTVEQPAEVKLEDKKVEDSVEQKKAVKKSKEKLEDKKAEDSVEQKKAVKKSEEKLEVNKAEGSVEKNKAVKKSEEKLEDKKVEDGIEQKKAVNKSKKKAAKEKINDKKADIKEVIEEKFNSRKEDAAKKTVNFVFGEDIRFAELQVNCSLQHLREVVSERFPSAGAVLVKYRDQEGDLVTITSDEELRWAQTSAGSESSIRLCIVDTDPEKDPLFEKTNEKKPVINNNALQREKERKGKEMIRSSSCIEDWIIQFAQLFKNYVGIESDRYLDFHELGMKLYYEAMEETVTSEEAQSLFDMAGAKFQEMAALALFNWGNVHMSRARKKVNLTEVTSKENLHEQLKNSYEWVQQEYRRGGEKYEAAIKIKPNFYEGFLALGQQQFEQAKLSWYYAINTNIDLPIWQMYNNAEENMEKGMQIWEESEKKCLNEDSKSKDIEFHLQNMGLDSLLQNISSEEIAARAATLRSQINILYGTMLYERSIMEFKLGLPVWHACLEVALEKFELAGASPADITLMVKNHSSNNTSAEGLGFNVDKIVQAWNDIQEARRWQSRVSSYHLEPLFRRRA 753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g0630 753 SMART tpr_5 62 97 IPR019734 GO:0005515
Lele20g0630 753 SMART tpr_5 98 131 IPR019734 GO:0005515
Lele20g0630 753 SMART tpr_5 24 57 IPR019734 GO:0005515
Lele20g0630 753 SUPERFAMILY TPR-like 22 136 IPR011990 GO:0005515
Lele20g0630 753 SMART PB1_new 314 393 IPR000270 GO:0005515
Lele20g0630 753 Coils Coil 750 753 - -
Lele20g0630 753 Coils Coil 283 303 - -
Lele20g0630 753 MobiDBLite consensus disorder prediction 166 264 - -
Lele20g0630 753 MobiDBLite consensus disorder prediction 169 264 - -
Lele20g0630 753 Gene3D Tetratricopeptide repeat domain 22 148 IPR011990 GO:0005515
Lele20g0630 753 ProSiteProfiles TPR repeat profile. 24 57 IPR019734 GO:0005515
Lele20g0630 753 Coils Coil 202 225 - -
Lele20g0630 753 PANTHER PROTEIN CLMP1 231 752 IPR044517 -
Lele20g0630 753 ProSiteProfiles PB1 domain profile. 314 393 IPR000270 GO:0005515
Lele20g0630 753 Gene3D - 313 396 - -
Lele20g0630 753 SUPERFAMILY CAD & PB1 domains 315 382 - -
Lele20g0630 753 Pfam PB1 domain 316 391 IPR000270 GO:0005515
Lele20g0630 753 CDD PB1 322 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g0630 Lele-ChrLele20 13549454 13551785 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g0630 12 131 Calmodulin-binding Proteins AT3G25230 33.333 1.10e-07 53.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele20g0630 20 13549454 13551785 Lele20g0630 20 13549454 13551785 ECH
Lele17g0731 17 18999667 19001977 Lele20g0630 20 13549454 13551785 hybridization
Lele18g0790 18 4955247 4959336 Lele20g0630 20 13549454 13551785 hybridization