Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g0619 ATGGCAAGTAATGGCGCTGAAAAGATCCCTATCAATAATGACACTGAAGGTTCAGAAACCGCCATTGAGATAAAGATTAAAACATTGGACTCGCAAATTTATACTCTCAAAGTGGATAAACAGATGCCAGTTCCTGCTTTGAAGGAACAGATTGCTTCTGTAACTGGAGTGTTGTCAGAGCGGCAGCGCTTGATTTGTCGAGGAAAAGTTCTAAAGGATGATCAACTCCTTTCTTCCTACCATGTTGAAGATGGTCATACCTTGCATATGGTTGTGAGGCAACCTGATCTACTTGGAAGTTTGCCCAATCAATCCGCAACTGACCCACATTCAAGTACAAACAATAGTCACGGTAACCAAATAGCTCCTGGCGTTTTTATTGAAACTTTTAATGTGCCTGTTCAGGGAGATGGAGTTCCTCCAGAAGTTAATAGGATCATTTCCGCTATTCTAGGATCTATTGGAATTTCAAATTTTCCGAGTGGCAGTGAAGGGATTGATGTCAGGGGACATGATTCCCAAGGGCTAGGGAGAACATCAGGTTCTAGTGGTATATCAGATTCATTTCATCCTCAACCTGAACAAGCTGGTTTGCGGAATTCATCTGATAGATCACGTAATATATTTGGACTTCCATCAGCAGCTTCTTCTGTGGGATCATTACAGCCTCCTGTCATTCCTGATTCTTTGACAACTTTGTCTCAGTACGTGAGTCATCTAAGGCATGAATTTGAAGCCATTGTGAGAGAAGGGGGAAATAGTACCCAAGCAGCTGAGGCTCATAGAAATGAAGCATCGATTTCTTCTTCACCTTCAGGTTCTACACCAGAAGGGCTTTTGTCACCTGCATACTTGGCGGAAGTCTTGCATTCTACCAGACGGATGTTCGTTGAACAGGCTAATGAGTGCTTATTTCAACTTGCATCACAGCTTGAGAATCAAGGAAATGTAACTGATCCCTTGTTGAGGTCAAACACTCAGTCTAGGGCTTGGAGGACTGGAGTTCTGTTTTACAATCTTGGTGCCCTTCTACTCGAGCTTGGTCGTACAACCATGGCATTACGTTTGGGTCAAACACCGTCTGAAGCTGTAGCTAATGGCGGACCAGCAGTTTTTATATCCTCATCTGGTCCTAACCATATCATGGTTCAGCCTCTTCCTTTTCAACCTGGAGCAAGCTTTGGTTCTGCCCCTGTTGGAGCTTTGCAGTCCCCCTCTGGTTTAGGTGGTGGACTTGGTTCAAGTTTTTACCCAAGGCGTATAGATATTCAGATACGGCGAGGTACATCAACATCCTCAGCTAATGCCAACAGAGAAGAACATGGTGATACAACACAATCTGCCTCAGTTCAAAGAAATCCTGTTGAAATTTCTGTCAATCAAACAAGCTCGAGACTTCCAGAAGATTTATCTTTTGGTGAGGAGTCAGGAGTACGGATAGTGCCAGTTAGAACCATGGTTGCAGCAGTACCTAGCCACCTAGGTCGCAACCCTTCAGAGCCTTCTGCTAATTCTATAGGGCTTTACTATCCTGTTATTGGGAGATTTCAGCATGCACCTTCTGGACATGGGAATAGTGAATCAGGATCTCAACCTGCCAGTCAGCATCATGTTTCTGGTTTTCATGCAGTGCAACAGCCAACCCCTGAATCTACTGGGCAAAGGCAAAGCATGGATGATCCTACAAGAAATGGTTCTTCATCTACTCCTAGCTTAAGACAAGAGCCATCTTGTACCCGCAGGGTGAACATCAATATTCTGACGGCTGGTGGACTCCAGAACAACCAAGAATCCGAGAGGCAGATACCCAATAATGTACTTCAGTTTATAAGAGCTCCTTTTCCTGGCGGTGAAATTCATGTTGATGATTCTAGTTCACAAGGAACCACCGGTGGTACTACCTTAGATGTTGCTGGAACATCAACAGGCGGTGCCCGTGCCGCTGAGTCAGAGCCCAGAGCCAGTGAGGAAGGAATATTTTTGTCTAATATACTCCGTGAGGTCATGCCCCTCATATCACAAGTAGGGTCTGGGACGCATGGAACTCTGCAAGATGAAAATGCTTCAGACAATCAAACAGCTTCTGATTCTTCCACCCAGGTTGGGGGATCACGCAGACAAAGTGATTCTGATCCAAGCCCTCCAAATCCTAAACGCCAAAAGATGGAGTGA 2172 0.4489 MASNGAEKIPINNDTEGSETAIEIKIKTLDSQIYTLKVDKQMPVPALKEQIASVTGVLSERQRLICRGKVLKDDQLLSSYHVEDGHTLHMVVRQPDLLGSLPNQSATDPHSSTNNSHGNQIAPGVFIETFNVPVQGDGVPPEVNRIISAILGSIGISNFPSGSEGIDVRGHDSQGLGRTSGSSGISDSFHPQPEQAGLRNSSDRSRNIFGLPSAASSVGSLQPPVIPDSLTTLSQYVSHLRHEFEAIVREGGNSTQAAEAHRNEASISSSPSGSTPEGLLSPAYLAEVLHSTRRMFVEQANECLFQLASQLENQGNVTDPLLRSNTQSRAWRTGVLFYNLGALLLELGRTTMALRLGQTPSEAVANGGPAVFISSSGPNHIMVQPLPFQPGASFGSAPVGALQSPSGLGGGLGSSFYPRRIDIQIRRGTSTSSANANREEHGDTTQSASVQRNPVEISVNQTSSRLPEDLSFGEESGVRIVPVRTMVAAVPSHLGRNPSEPSANSIGLYYPVIGRFQHAPSGHGNSESGSQPASQHHVSGFHAVQQPTPESTGQRQSMDDPTRNGSSSTPSLRQEPSCTRRVNINILTAGGLQNNQESERQIPNNVLQFIRAPFPGGEIHVDDSSSQGTTGGTTLDVAGTSTGGARAAESEPRASEEGIFLSNILREVMPLISQVGSGTHGTLQDENASDNQTASDSSTQVGGSRRQSDSDPSPPNPKRQKME 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g0619 723 MobiDBLite consensus disorder prediction 165 206 - -
Lele20g0619 723 MobiDBLite consensus disorder prediction 622 640 - -
Lele20g0619 723 MobiDBLite consensus disorder prediction 619 655 - -
Lele20g0619 723 Gene3D - 15 116 - -
Lele20g0619 723 MobiDBLite consensus disorder prediction 429 469 - -
Lele20g0619 723 MobiDBLite consensus disorder prediction 252 276 - -
Lele20g0619 723 SMART ubq_7 22 93 IPR000626 GO:0005515
Lele20g0619 723 Pfam Ubiquitin family 24 94 IPR000626 GO:0005515
Lele20g0619 723 MobiDBLite consensus disorder prediction 676 723 - -
Lele20g0619 723 MobiDBLite consensus disorder prediction 521 579 - -
Lele20g0619 723 CDD Ubl_ubiquitin_like 24 91 - -
Lele20g0619 723 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 11 722 - -
Lele20g0619 723 MobiDBLite consensus disorder prediction 518 579 - -
Lele20g0619 723 MobiDBLite consensus disorder prediction 175 206 - -
Lele20g0619 723 SUPERFAMILY Ubiquitin-like 17 97 IPR029071 -
Lele20g0619 723 FunFam Large proline-rich protein BAG6 14 107 - -
Lele20g0619 723 MobiDBLite consensus disorder prediction 256 276 - -
Lele20g0619 723 MobiDBLite consensus disorder prediction 676 715 - -
Lele20g0619 723 MobiDBLite consensus disorder prediction 100 120 - -
Lele20g0619 723 MobiDBLite consensus disorder prediction 429 470 - -
Lele20g0619 723 ProSiteProfiles Ubiquitin domain profile. 22 97 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g0619 Lele-ChrLele20 13475992 13481734 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g0619 22 93 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 34.722 3.58e-08 50.8