Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g0617 ATGTGTTTGCAGGACGCCGAGCAAGTTGGCGCCGATATGGAGAGCCCAGATGATGATAGAAGAAGGTCTTGGCCTTTGCATTGTGACCTCTTGCATACCCACATGGAAGAAGAACCTCCTTTTAGAACTTCCGGCGATAGGAGTCTCAGTGTTGTGAATTCAATTCCGCTGGAAAGCATAGGTGAGGACACAGTGATTGCGGACAGAAAACAGAACCAGATGAACTTTGTCCCTGCTCTGCGATCTGGCGAGTGGTCAGATATCGGAGGTCGCCCTTATATGGAAGATACTCACATCTGCATTGGAGACTTAGGAAAGAAATTTGGTTATGATGAACTCAGTGAGGAAGTTATTTCCTTTTATGGAGTTTTCGATGGACACGGAGGGAAGAGTGCTGCGGTATTCGTCCGTGATCATCTTCCAAGAGTTATTATTGAGGATTCTGATTTTCCTGTGGAGCTAGAGAAAGTGGTCACAAGGTCATTTTTACAGACAGATGCTGCATTTGCAGAGACATGTTCCCTTGAGTCTTCATTGTCTTCTGGTACAACTGCATTAACTGCCATTATTTTTGGGAGGTCTTTGCTAGTGGCCAATGCTGGAGACTGCAGGGCTGTTTTGTCCAGACGTGGACGGGCGATAGAAATGTCCAAAGATCATAGGACCTTCTGCGTGAAAGAGAGGAAGCGAGTAGAGTCTCTGGGTGGATTCGTTGATGACGGTTATCTGAATGGCCAGTTAGGTGTCACGCGGGCACTAGGAGACTGGCATCTTGAGGGCTTGAAGGAAATGACTGAAAGAGGAGGACCTTTAAGTGCTGAGCCAGAACTCAAACTGACCACACTGACCAAAGAAGATGAGTTTTTGATAATTGGAAGTGATGGGATCTGGGATGTTTTCAGCAGCCAAAACGCTGTAGATTTTGCAAGGAGGAGGCTTCAAGAGCATAATGATGTGAAACTATGTTGTAAGGAAATGGTGGAGGAAGCTATAAAGAGAGATTCAACAGATAACTTAACTGTTGTGATGGTGTGTTTTCACTCAGAACCACCACCACCTATGGTGGTAGAGAGGCCAAGATTCGGAAGAAGCATATCTGCTGAGGGACTTCAGAATCTCAGGTCCTTCCTCGAAGGATAG 1140 0.4605 MCLQDAEQVGADMESPDDDRRRSWPLHCDLLHTHMEEEPPFRTSGDRSLSVVNSIPLESIGEDTVIADRKQNQMNFVPALRSGEWSDIGGRPYMEDTHICIGDLGKKFGYDELSEEVISFYGVFDGHGGKSAAVFVRDHLPRVIIEDSDFPVELEKVVTRSFLQTDAAFAETCSLESSLSSGTTALTAIIFGRSLLVANAGDCRAVLSRRGRAIEMSKDHRTFCVKERKRVESLGGFVDDGYLNGQLGVTRALGDWHLEGLKEMTERGGPLSAEPELKLTTLTKEDEFLIIGSDGIWDVFSSQNAVDFARRRLQEHNDVKLCCKEMVEEAIKRDSTDNLTVVMVCFHSEPPPPMVVERPRFGRSISAEGLQNLRSFLEG 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g0617 379 CDD PP2Cc 81 346 IPR001932 -
Lele20g0617 379 ProSiteProfiles PPM-type phosphatase domain profile. 81 346 IPR001932 -
Lele20g0617 379 Pfam Protein phosphatase 2C 93 338 IPR001932 -
Lele20g0617 379 PANTHER PROTEIN PHOSPHATASE 2C 68 344 IPR015655 GO:0004722|GO:0006470
Lele20g0617 379 SUPERFAMILY PP2C-like 73 348 IPR036457 -
Lele20g0617 379 MobiDBLite consensus disorder prediction 1 21 - -
Lele20g0617 379 SMART PP2C_4 71 344 IPR001932 -
Lele20g0617 379 FunFam Probable protein phosphatase 2C 22 65 349 - -
Lele20g0617 379 Gene3D - 64 350 IPR036457 -
Lele20g0617 379 ProSitePatterns PPM-type phosphatase domain signature. 120 128 IPR000222 GO:0043169
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g0617 Lele-ChrLele20 13460597 13463603 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g0617 45 379 PP2C-type Phosphatase Gene Family AT2G25620 58.213 5.24e-140 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBP Lele20g0617 PP2C 3.2e-66 CL0238