Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g0615 ATGGCATTGATCGATGATTGCGTGCCGCTTAAGGGTGATGGTGTCCATGGGGGTGCTGTGGCCCTGGACCTGGTCCGCCGGCTCCACCTGGCCCTCCGGGAGGAGGTGCAGCACCAGGGCCTGGTGGATGTGGACGGAGGCCGCCCGGAGGAGGTGGAGGGCCGGGATTGGGAGGTCCCGGTGGCCCTGAAAGTAGGGAAAATAATTGCAAGTGAAGGAAAGCTTGTCGCAGGTCAGCTTCCATCATCATCACGAGAATCAACTTCTCTGGGCCTCTCCTTTCCCCCTCCTCTCTGTCTCTTCCCACCTTCCCTCCCCTTACTCTTTCTTCCTTTCTTTCTTCTCACAATGGGTTCCACCAACAGTAGACTTCTGTCTCGCTCTTCCGCCCCACGAGTCAATGGCACTAACCGCTTCAGATTCTCCTCCCTTCTCTGCGGTGGCTCCGCTACCCGTTCCACTTATGAGATGGAAGATCAACCAACTGAACTTCAGAGAGATTCTGCAACAGAATTTAATGATGAAAATCAGAAAGTTGTTGAGGAGTCATCTATATCATGTACAGAAGCTAGAATTGGTTGCGGCCCCCATACTGAAACTGCAAGCTCATCGGATACTATAACAGAGTTGAGTGAGATTTCTACTGTTGAAGGTTCCTCCAGAAGTGTTTCAACTAGTTGTCAAACAAAGTACTTGTCTGAAAGTAAGGAGCTAGTTCCTCCTCATCAGGTACGTGTTGATCATAGTTATGATGAATCTTATAGGGATAGTAGCAACACAGCTAGTACTTCATTTGTGGAACAGCAGTCTTCAGATCCAGTCTCTGTAAATGTTTCTGCTAACAAAGATGCAGTCAATGATATTGATGGTTCAGTGGATAGTGGTGTTTCTCAAATATCTCGCGAGACAATGTATCCGAGGAGGTCAACCTCTCATGAGCAAGGAGATTCCTATGCCAATGATATTTCTATTGAGAATCGCACACATTCAGCTGTACCTATCCATTATTCTGAATTGAATCATGTTGCTCAAGTTTCCAATTTACCCGCAACTTCTGAGTTGCCTGAAAATGAAACCCGTCAGGACACAATACCTTCAGGTTTAGGTTTTCTTGTCTCCAATAGGGAAAGAGGACAGGGAAATGATAGTATGTTTCAAGTTGATGTTGTCGCAATACCTTCCAATGTTTTGTCTGGTGGCAATGCTGATGTTAGTGATCATGATGCTCGAAGGGATAGTAGAAGACTATTCTGGGATGCTTTTTCAAGACGTAGTTCCAGAAGATTTGGTGATTCTCGAACCTTTGTCTTCTCAGCTGGTGACGTTGATGATCCAAGTTCTCAAGATCAATGGCTTCTTGATTTGAGTAATAATTCCTCAAATGATAGGGTTGGAGGTGATTCTGGATATCTGGGCAGTAGGATTCATAGATTGAACGAGCGGATGAGGCACTCAAGATCTGAGATCTGGGAAAGACTTCGTGGTGGCCTTGATGAGATTGGTCGGTTGAACCCTTCTTGTCCATTAGGACTCCACCCTGATGGCATGTGTTCATGCGAATCTTTCCAGATGGCTGAGGAGTCCAGTACTCGTGCTAGTATATCAAGAATAGCTATGCTTGCTGAAGCTCTATTTGAGGTCTTGGATGAGATCCATCGCCAACCTGTATCACTTGCCCTCTCCATGGTCTCTCTTCCAGCACCAGAATCAATCGTAGACTCTTTCCCTCTTAAGTGTCACAAAAAGATTGACACAGCTGATAATGGCAATGATGCTGAACAATGTTACATATGCCTGGCTGAGTATGAGGAAGGAGACAAAATACGTGTTCTTCCATGCAACCATGAGTACCACATGTCATGTGTTGATAAGTGGCTTAAAGAAATACATGGTGTATGCCCCCTTTGTCGAGGGAATGTTTGTGGAGGGTCCAACGAGTCTTCTGCCTCAAACCCAGAAGTTCCATCGCAATGA 1974 0.4615 MALIDDCVPLKGDGVHGGAVALDLVRRLHLALREEVQHQGLVDVDGGRPEEVEGRDWEVPVALKVGKIIASEGKLVAGQLPSSSRESTSLGLSFPPPLCLFPPSLPLLFLPFFLLTMGSTNSRLLSRSSAPRVNGTNRFRFSSLLCGGSATRSTYEMEDQPTELQRDSATEFNDENQKVVEESSISCTEARIGCGPHTETASSSDTITELSEISTVEGSSRSVSTSCQTKYLSESKELVPPHQVRVDHSYDESYRDSSNTASTSFVEQQSSDPVSVNVSANKDAVNDIDGSVDSGVSQISRETMYPRRSTSHEQGDSYANDISIENRTHSAVPIHYSELNHVAQVSNLPATSELPENETRQDTIPSGLGFLVSNRERGQGNDSMFQVDVVAIPSNVLSGGNADVSDHDARRDSRRLFWDAFSRRSSRRFGDSRTFVFSAGDVDDPSSQDQWLLDLSNNSSNDRVGGDSGYLGSRIHRLNERMRHSRSEIWERLRGGLDEIGRLNPSCPLGLHPDGMCSCESFQMAEESSTRASISRIAMLAEALFEVLDEIHRQPVSLALSMVSLPAPESIVDSFPLKCHKKIDTADNGNDAEQCYICLAEYEEGDKIRVLPCNHEYHMSCVDKWLKEIHGVCPLCRGNVCGGSNESSASNPEVPSQ 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g0615 657 CDD mRING-H2-C3H2C2D_ZSWM2 594 637 - -
Lele20g0615 657 SUPERFAMILY RING/U-box 580 640 - -
Lele20g0615 657 SMART ring_2 595 636 IPR001841 -
Lele20g0615 657 MobiDBLite consensus disorder prediction 249 316 - -
Lele20g0615 657 FunFam Putative RING zinc finger domain superfamily protein 562 642 - -
Lele20g0615 657 ProSiteProfiles Zinc finger RING-type profile. 595 637 IPR001841 -
Lele20g0615 657 MobiDBLite consensus disorder prediction 255 284 - -
Lele20g0615 657 MobiDBLite consensus disorder prediction 291 316 - -
Lele20g0615 657 Pfam Ring finger domain 594 637 IPR001841 -
Lele20g0615 657 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 117 656 - -
Lele20g0615 657 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 572 643 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g0615 Lele-ChrLele20 13447797 13454603 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g0615 506 641 C3H Transcription Factor Family AT5G45290 52.318 2.97e-40 153