Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g0613 ATGGCCGGAAATCTTCCCGGAGTAGAGTGTGCTCGAAGGAGAAGGTTTCATCAGAGTGGAGTATGGTCTGATTCACCACCATCCTCTATGATTCCTCATACTTCCACTAGACGCTCTTCTTTCTGCTTGTACACTAGCAAACATGAATCTCTGTCTTCTTCCTCTTTACTGCAAAGAACTTTGATATACCAGGCATACCCACATGAAATGCTGGGAGGTGCAGCTGGGGAAGCCAAACATAGATTGGATGAGAGATTAGGAACTCAGAGGAAAACAGAGATTAAAAGCAAGCAGAAGAGCAGCGAGAAGGTAAGGAGTGAAGCAGAGTTGCAGATAGAGATATATGGGGCAAAGAAAAATGGAAGCAGGAGATTCAGTTGGAGCAAATTGAGCTGGAAGGCATCGGAACAACAGGAGTGTGCAGTGTGCTTAGAATCATTCAAGAATGGGGATACACTGATAAACCTTCCATGTGCACACAGGTTCCATTCAAGGTGTTTGCAGCCATGGCTGCAAAATAATTCTCATTGTCCTTGTTGCAGAACCACCGTCATCAGTTCTCACTAG 567 0.4497 MAGNLPGVECARRRRFHQSGVWSDSPPSSMIPHTSTRRSSFCLYTSKHESLSSSSLLQRTLIYQAYPHEMLGGAAGEAKHRLDERLGTQRKTEIKSKQKSSEKVRSEAELQIEIYGAKKNGSRRFSWSKLSWKASEQQECAVCLESFKNGDTLINLPCAHRFHSRCLQPWLQNNSHCPCCRTTVISSH 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g0613 188 FunFam Zinc finger family protein 114 186 - -
Lele20g0613 188 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 120 187 IPR013083 -
Lele20g0613 188 SMART ring_2 140 180 IPR001841 -
Lele20g0613 188 ProSiteProfiles Zinc finger RING-type profile. 140 181 IPR001841 -
Lele20g0613 188 Pfam Ring finger domain 139 181 IPR001841 -
Lele20g0613 188 SUPERFAMILY RING/U-box 127 185 - -
Lele20g0613 188 CDD RING-H2_PA-TM-RING 139 181 - -
Lele20g0613 188 PANTHER SI:CH211-59O9.10 135 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g0613 Lele-ChrLele20 13441637 13442453 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g0613 34 184 C3H Transcription Factor Family AT1G49850 33.125 3.83e-17 75.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele17g0712 17 18868788 18869624 Lele20g0613 20 13441637 13442453 hybridization