Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g0601 ATGTCAGGCTGGGACGAGGGAGCTGTCTACTATAGTGACCAAGCTCACTCCTGGGACGACCGCGGCGGAGATGCTCCCACTGCGGCAGCCGACAACCACACGATCCTCCAGAAATTAAAGGAGTTCATCCGAAACTTTGAGACTGACAAAAATGTGTTCCCTTATAGAGAAAGCCTTGTCCATAATCCCAAGTTCCTAGTTGTCGACTTGGAAGATCTTGATGCCTTCGATTCTGACCTTCCCGCCAAGCTCCGCTCTAACCCGGCTGATTACCTTCCACTGTTTGAGATGGCGGCCGCCCAGGTTTTGGTAAGTTTGAAGACGAAAGTGGCCGGGGATACTGGGGTTATGGAAGACCCAGTGACTGGGGATGTGCAGATTTTGCTCACTTCCAGGGAGGATCCAGTGTCAATGAGATCCCTCGGGGCTCAATATATATCAAAGCTGGTTAAAATCGCGGGGATTACAATTGCTGCATCGAGGACTAAGGCGAAGGCAACTTACGTCACCTTAATATGTAAGAATTGCAAAAAGGGGAAGCAAGTTCCATGTCGGCCAGGACTTGGTGGGGCGATTGTCCCTCGTTCATGTGATCATATTCCTCAGCCAGGAGAAGAACCGTGCCCTATTGATCCATGGCTTGTGGTTCCTGATAAGAGCAAGTATGTTGACCAACAAACCTTAAAACTACAAGAAAACCCTGAGGATGTTCCAACTGGGGAGCTTCCCAGAAACATGCTTCTCTCTGTTGATCGTCATCTTGTTCAAACAGTGGTACCTGGCTCAAGATTGACTATCATAGGAATATATAGTATCTATCAAACTTCTAATTCTTCTGCAGCCCAAAAAGGAGCTGTTGCAGTTAGACAGCCTTACATTAGGGTTGTTGGAATGGAACAAGCAAACGAAGCCAGCTCTCGAGGTCCAGCTGCATTCACACAAGAGGAGATAGAAGAATTCAAAAAGTTTGCTGCTGAACCTGATGCATACAGAAGTATATGCGCCAAGATTGCTCCCTCTATATTTGGCCATGATGACGTCAAAAAGGCTGTGGCTTGTCTTCTTTTTGGAGGGTCAAGAAAGAACTTGCCCGATGGAGTGAAGTTAAGAGGTGATATCAACGTATTACTCCTTGGGGATCCATCAACTGCAAAGTCGCAGTTTCTCAAGTTTGTTGAAAAGACTGCTCCAGTTGCTGTTTATACTTCGGGAAAAGGATCATCAGCCGCAGGTCTCACAGCTTCTGTAATTCGAGATAGCAGCTCTCGAGAGTTCTATCTTGAAGGAGGGGCCATGGTCTTGGCAGATGGAGGTGTTGTCTGCATTGATGAGTTTGACAAGATGAGACCAGAGGATAGGGTTGCCATTCATGAAGCTATGGAACAGCAAACTATATCCATAGCAAAAGCAGGAATAACAACTGTTCTTAATTCAAGAACTTCTGTGCTTGCTGCTGCCAACCCTCCATCAGGACGTTATGATGATCTTAAGACTGCACAGGATAACATTGATCTGCAAACGACCATTCTTTCTAGGTTCGATTTAATCTTCATTGTGAAAGACATCAGAATGTATAGTCAAGACAAGATCATAGCTAGTCATATCATTAAGGTTCATGCATCAGCTAATACAACGACTGGTGAGAGTAGGGTTTCTAAAGAAGAGAACTGGCTCAAGAGGTATTTACAATATTGCCGAACTGAATGTCACCCTCGTCTGTCAGAATCTGCGTCAACATTACTACAGAACAATTATGTCAAAATTAGGCAGGATATGAGGAGGCAGGCAAATGAAACTGGAGAAGCTGCTGCTATACCAATTACTGTAAGGCAGCTGGAAGCTATTGTTAGACTGAGTGAGGCTCTTGCAAAAATGAAGCTATCTCATATTGCCACCGAGGAGAATGTGCAAGAAGCAATAAGGCTTTTTACCGTTTCTACAATGGATGCAGCTAAGTCTGGAATATCCCAACAAGTCAATCTCACACCAGAAATGGCAAATGAAATAAAGCAAGCCGAAACCCAGATAAAGAGAAGAATTGGGATTGGAAACCATTTATCAGAAAGAAGGTTGATTGATGATCTCGTTAGAATGGGATTAAATGACTCCATTGTGAGAAGAGCTCTAATAATCATGCATCAGAGAGACGAAATAGAATATAAGAGAGAGAGGCGTGTTATATTCAGGAAAGCATAA 2196 0.4431 MSGWDEGAVYYSDQAHSWDDRGGDAPTAAADNHTILQKLKEFIRNFETDKNVFPYRESLVHNPKFLVVDLEDLDAFDSDLPAKLRSNPADYLPLFEMAAAQVLVSLKTKVAGDTGVMEDPVTGDVQILLTSREDPVSMRSLGAQYISKLVKIAGITIAASRTKAKATYVTLICKNCKKGKQVPCRPGLGGAIVPRSCDHIPQPGEEPCPIDPWLVVPDKSKYVDQQTLKLQENPEDVPTGELPRNMLLSVDRHLVQTVVPGSRLTIIGIYSIYQTSNSSAAQKGAVAVRQPYIRVVGMEQANEASSRGPAAFTQEEIEEFKKFAAEPDAYRSICAKIAPSIFGHDDVKKAVACLLFGGSRKNLPDGVKLRGDINVLLLGDPSTAKSQFLKFVEKTAPVAVYTSGKGSSAAGLTASVIRDSSSREFYLEGGAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKTAQDNIDLQTTILSRFDLIFIVKDIRMYSQDKIIASHIIKVHASANTTTGESRVSKEENWLKRYLQYCRTECHPRLSESASTLLQNNYVKIRQDMRRQANETGEAAAIPITVRQLEAIVRLSEALAKMKLSHIATEENVQEAIRLFTVSTMDAAKSGISQQVNLTPEMANEIKQAETQIKRRIGIGNHLSERRLIDDLVRMGLNDSIVRRALIIMHQRDEIEYKRERRVIFRKA 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g0601 731 Gene3D - 165 223 - -
Lele20g0601 731 CDD MCM5 333 646 - -
Lele20g0601 731 Gene3D - 138 273 IPR012340 -
Lele20g0601 731 Gene3D - 30 115 - -
Lele20g0601 731 FunFam DNA helicase 310 661 - -
Lele20g0601 731 Pfam MCM P-loop domain 317 539 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lele20g0601 731 ProSitePatterns MCM family signature. 438 446 IPR018525 GO:0003677|GO:0005524|GO:0006260
Lele20g0601 731 FunFam DNA helicase 165 223 - -
Lele20g0601 731 Gene3D - 310 666 IPR027417 -
Lele20g0601 731 SUPERFAMILY Nucleic acid-binding proteins 39 295 IPR012340 -
Lele20g0601 731 ProSiteProfiles MCM family domain profile. 329 535 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lele20g0601 731 Pfam MCM AAA-lid domain 557 646 IPR041562 -
Lele20g0601 731 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 339 647 IPR027417 -
Lele20g0601 731 PRINTS Mini-chromosome maintenance (MCM) protein family signature 509 517 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lele20g0601 731 PRINTS Mini-chromosome maintenance (MCM) protein family signature 482 494 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lele20g0601 731 PRINTS Mini-chromosome maintenance (MCM) protein family signature 370 385 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lele20g0601 731 PRINTS Mini-chromosome maintenance (MCM) protein family signature 430 444 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lele20g0601 731 PRINTS Mini-chromosome maintenance (MCM) protein family signature 458 471 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lele20g0601 731 Pfam MCM N-terminal domain 38 108 IPR027925 -
Lele20g0601 731 Pfam MCM OB domain 138 273 IPR033762 -
Lele20g0601 731 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 32 687 IPR031327 GO:0003677|GO:0005524|GO:0032508
Lele20g0601 731 SMART mcm 134 648 IPR031327 GO:0003677|GO:0005524|GO:0032508
Lele20g0601 731 FunFam DNA helicase 30 118 - -
Lele20g0601 731 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 139 154 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Lele20g0601 731 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 289 301 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Lele20g0601 731 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 565 580 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Lele20g0601 731 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 641 658 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Lele20g0601 731 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 165 177 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g0601 Lele-ChrLele20 13376751 13381966 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g0601 1 731 Core DNA Replication Machinery Family AT2G07690 79.207 0.0 1201