LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele20g0592	ATGATTCTGGAGGACAAAAGCTGCGATTTGGGTGACGACAATGGAACCGCGAAAAAGTTTCCTGCAGGTATGAGTGTTCTGGCTGTTGACGACGACCCAATTTGTCTCAAAGTGTTGGAGACTCTGCTTGTCAAATGCGAGTATCAGGTTACTACAACTAATCAGGCGGTTAAGGCTTTGAAAATGCTAAGGGAAAACAGGAACACGTTTGACCTCGTCATTAGTGATGTAAATATGCCAGACATGGATGGATTTAAGCTCCTTGAGCAAGTGGGACTTGAAATGGACCTACCAGTCATCATGTTGTCAGCACACAGTGATACAAGGCTTGTGATGAAGGGTGTTACACACGGTGCATGTGACTATTTACTGAAACCTGTTAGAATGGAAGAACTAAAGAACATATGGCAACATGTGGTTCGAAGAAAGAAGTTTGATATCAAAGATCAGAATAAGGCTTCTTCTTCTCAGGTGGAGAAGCCGAACAATATGGGGAATAGGGAAGGGAATCCAGCCATCAGTTCAGAAAATAATTCAGATCAAAGTAAAAAGCTGGGTAAAAGGAGGAAGGACCTAGATGATGATGAGGAAGAACATGGTGAAGACAACGTACAAGAGAACGAGGAGGACCCATCGACACAGAAAAAGCCGCGTGTTGTTTGGTCACCGGAGCTGCACAGGAAATTTGTTGCCGCAGTTGATCAACTGGGACTTGAAAAAGCTGTTCCCAAGAAAATTCTTGACCTGATGAATGTTGAAGGGCTTACAAGGGAAAATGTGGCGAGCCATCTACAGAAATATAGAATCTATCTTACAAAGGCAACTCAACAGGTTAAAATTGCTGCTGCATTGGGTAGTGAATCATCGTACTTGCGGATGAGTTCATTAGAGGGTTATGGAGAGTTTCGCGCTTTGTCTGATTCAGGACGGCTCTCATCAATATTTGCATCTACTGGAATTTTTAGCAGACTGAACTCTCCAGCTGGCTTGAACTGGAGAGGAATCGGTTCTTCTCGGCTGATCCAATCCGGTCAGTCTCAAAACTCGAGCCTTACCACAAACACACTTGGAAATCTTCAACCATCACCTATCTTGTCTGCAAACTCAAGTTTATTTCAAAGCATTCCAACACCAATAGAGCTGAATCCATCTCAACCAAGCAACTTTGCCACTGGTATTCGGCCGACTGGTTCAATTGACGATTCGGGTGGTTTTGGAGCTACTGGTGGATTCCTAGACAGTAAAGCTACCAATGGCTGTGCAAACAGTTATGTACCTTGCTTCTCAAGTAATCATTTGATGTTACAAGGAAACTCACAGCAATCTCATAATGTGGGAGGATTTAAAAATCAATCTTCTTTCGGAGCTGATCCTTTGAGCTCGGAAACTTCAGATATCTATGGTTCCAATTTGTTGGACTACACACGATGCAATGAAAGCTGGCAGGGCGCCGTTCAGTTACCTAGCGGCGTAAATGTTTCTTCCTCCAATACTTACATCAGTAACCACCCAGTTGATTTTTCTTCTTCTGTTCCACTGGAGGATTTTACAGGTGAACTACAATGTCAAGAAGGCCTAATTGGGAATGTGGTTCAGTCTTCAAGTTACACGTCAAGACAGAACAGGGAACTACATAAGCAGGATTACAACCAAAACATGAACTGCAATTCCAGTGCTGTGAATTCACTGGTTTCTTCTAATAGAATAATAACAAGTACCACCATGGGGCAGAGTTTGAATCAAAATAATTCAACATGCAGCAACAAGAAGGTGGATTCATCTTTCATGGACCCATTCAATGAGGCTACCCCATCAATCTGTCAGTTTAATGATGATGAGAGGTTCTCTTCAGATCTGAGATTCAAATCTTCTGATGCATACAAAGATGGTTTCATTAGGAATATCGGATATTTGGATGACATAATGGGTTCAATGGTTAAACGGTTTCATGAGGGCTATATAATGCAGGAGCAACGCGAGATGATATTGATGGATGGAGAGACCCGATTCGACGCTTACCCGATTGGATCTTGTATCTGA	2040	0.426	MILEDKSCDLGDDNGTAKKFPAGMSVLAVDDDPICLKVLETLLVKCEYQVTTTNQAVKALKMLRENRNTFDLVISDVNMPDMDGFKLLEQVGLEMDLPVIMLSAHSDTRLVMKGVTHGACDYLLKPVRMEELKNIWQHVVRRKKFDIKDQNKASSSQVEKPNNMGNREGNPAISSENNSDQSKKLGKRRKDLDDDEEEHGEDNVQENEEDPSTQKKPRVVWSPELHRKFVAAVDQLGLEKAVPKKILDLMNVEGLTRENVASHLQKYRIYLTKATQQVKIAAALGSESSYLRMSSLEGYGEFRALSDSGRLSSIFASTGIFSRLNSPAGLNWRGIGSSRLIQSGQSQNSSLTTNTLGNLQPSPILSANSSLFQSIPTPIELNPSQPSNFATGIRPTGSIDDSGGFGATGGFLDSKATNGCANSYVPCFSSNHLMLQGNSQQSHNVGGFKNQSSFGADPLSSETSDIYGSNLLDYTRCNESWQGAVQLPSGVNVSSSNTYISNHPVDFSSSVPLEDFTGELQCQEGLIGNVVQSSSYTSRQNRELHKQDYNQNMNCNSSAVNSLVSSNRIITSTTMGQSLNQNNSTCSNKKVDSSFMDPFNEATPSICQFNDDERFSSDLRFKSSDAYKDGFIRNIGYLDDIMGSMVKRFHEGYIMQEQREMILMDGETRFDAYPIGSCI	679

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele20g0592	679	MobiDBLite	consensus disorder prediction	147	219	-	-
	Lele20g0592	679	SUPERFAMILY	CheY-like	23	144	IPR011006	-
	Lele20g0592	679	SMART	REC_2	24	136	IPR001789	GO:0000160
	Lele20g0592	679	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	213	272	IPR017930	-
	Lele20g0592	679	Pfam	Myb-like DNA-binding domain	218	268	IPR001005	-
	Lele20g0592	679	MobiDBLite	consensus disorder prediction	181	195	-	-
	Lele20g0592	679	Gene3D	-	212	274	-	-
	Lele20g0592	679	CDD	REC_typeB_ARR-like	26	140	-	-
	Lele20g0592	679	TIGRFAM	myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class	216	269	IPR006447	GO:0003677
	Lele20g0592	679	PIRSF	RR_ARR_type-B	7	633	IPR017053	GO:0003677\|GO:0003700\|GO:0009736
	Lele20g0592	679	PANTHER	TWO-COMPONENT RESPONSE REGULATOR	24	388	IPR045279	GO:0009736
	Lele20g0592	679	ProSiteProfiles	Response regulatory domain profile.	25	140	IPR001789	GO:0000160
	Lele20g0592	679	Gene3D	-	24	160	-	-
	Lele20g0592	679	FunFam	Two-component response regulator	212	275	-	-
	Lele20g0592	679	Pfam	Response regulator receiver domain	26	134	IPR001789	GO:0000160
	Lele20g0592	679	MobiDBLite	consensus disorder prediction	151	180	-	-
	Lele20g0592	679	SUPERFAMILY	Homeodomain-like	213	273	IPR009057	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele20g0592	Lele-ChrLele20	13316813	13320126	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele20g0592	19	388	Response Regulator Gene Family	AT2G25180	52.083	2.03e-110	344

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	GARP-ARR-B	Lele20g0592		Response_reg	1.1e-24	CL0304