Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g0578 ATGATTCCAGAACTTGTTGGTGGGAAGGGGAAGGGAGAAAAAGAGAGAAAGTCTGTTCCTTTTTCTTTCTGTTTATTTGAGTATCTCTGGAAAATGGCTGGGACTGGAGTTTTTGCAGAGATTTTTGATGGAGAAATGTACAAGTATTACGCTGATGGAGAATGGAAGAAGTCTTCTTCTGGAAAAAGTGTTCCTATTATTAATCCCACTACCAGGAAGACTCAGTACAAAGTTCAGGCTTGTACACAAGAAGAGGTGAATAAGGTGATGGATTTAGCAAAGTCTGCACAGAAGTCATGGGCAAAGACGCCACTATGGAAGCGAGCTGAGCTTCTTCACAAGGCAGCAGCCATTCTTAAAGAACACAAAGCTCCAATTGCAGAGTGTCTTGTTAAAGAAATAGCAAAACCAGCTAAAGATTCAGTCACAGAGGTTGTGAGATCTGGGGATCTGGTTTCTTACTGTGCTGAAGAAGGGGTGAGGATTCTGGGAGAGGGAAAGTTCTTGGTATCAGATAGTTTTCCTGGAAATGAAAGGACCAAGTATTGCCTCACATCCAAGATTCCATTGGGAGTAGTTTTAGCCATTCCACCATTTAATTATCCAGTAAATCTTGCCGTCTCAAAAATTGCTCCTGCATTGATTGCTGGAAACTCACTTGTGCTCAAACCTCCTACTCAGGGAGCTGTTTCTTGTCTGCATATGGTACAATGCTTTCACTTGGCTGGTTTTCCCAAAGGCTTAATCAGCTGTGTCACTGGCAAAGGCTCTGAGATTGGTGATTTCCTTACAATGCACCCAGGAGTGAACTGTATCAGCTTCACCGGTGGAGATACCGGCATTTCAATTTCGAAGAAGGCGGGCATGATCCCTCTGCAAATGGAGTTGGGAGGAAAAGATGCCTGCATTGTACTTGAAGATGCTGACCTTGATTTAGTAGCTTCAAACATTATAAAAGGAGGCTTCTCTTACAGTGGACAGAGGTGCACTGCTGTCAAGGTTGTCCTAGTGATGGAATCTGTTGCTGATGCTTTGGTGGAGAAAGTGAAGGCTAAGGTGGCAAAACTGACAGTGGGGACACCGGAAAATAACTGTGATATCACTCCGGTGGTTACAGAGTCATCGGCGAACTACATCGAAGGCCTTGTAATGGATGCTAAAGAGAAAGGAGCAACATTCTGCCAAGAGTACAAGAGGGAAGGAAATCTCATTTGGCCATTGCTTCTAGATAATGTCAGGCCTGATATGAGAATTGCTTGGGAGGAGCCATTTGGACCAGTCTTGCCTGTCATTAGAATCAATTCTGTTGAAGAAGGAATCCACCATTGCAATGCTAGCAATTTTGGACTTCAGGGTTGTGTCTTCACAAAGGATGTGAACAAAGCAATTTTGATCAGTGATGCAATGGAGACAGGAACTGTTCAGATAAACTCAGCCCCGGCCCGAGGACCCGATCATTTCCCCTTCCAGGGTATTAAGGACAGTGGAATTGGATCACAAGGGATTACAAACAGCATAAACATGATGACCAAGGTCAAGACCACTGTGATTAACTTGCCAGCCCCTTCTTATACCATGGGCTAA 1584 0.4407 MIPELVGGKGKGEKERKSVPFSFCLFEYLWKMAGTGVFAEIFDGEMYKYYADGEWKKSSSGKSVPIINPTTRKTQYKVQACTQEEVNKVMDLAKSAQKSWAKTPLWKRAELLHKAAAILKEHKAPIAECLVKEIAKPAKDSVTEVVRSGDLVSYCAEEGVRILGEGKFLVSDSFPGNERTKYCLTSKIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVSCLHMVQCFHLAGFPKGLISCVTGKGSEIGDFLTMHPGVNCISFTGGDTGISISKKAGMIPLQMELGGKDACIVLEDADLDLVASNIIKGGFSYSGQRCTAVKVVLVMESVADALVEKVKAKVAKLTVGTPENNCDITPVVTESSANYIEGLVMDAKEKGATFCQEYKREGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVIRINSVEEGIHHCNASNFGLQGCVFTKDVNKAILISDAMETGTVQINSAPARGPDHFPFQGIKDSGIGSQGITNSINMMTKVKTTVINLPAPSYTMG 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g0578 527 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 322 333 IPR016160 GO:0016491
Lele20g0578 527 FunFam NADP-dependent glyceraldehyde-3-phosphate dehydrogenase 298 488 - -
Lele20g0578 527 FunFam NADP-dependent glyceraldehyde-3-phosphate dehydrogenase 53 312 - -
Lele20g0578 527 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 294 301 IPR029510 GO:0016491
Lele20g0578 527 SUPERFAMILY ALDH-like 43 518 IPR016161 GO:0016491
Lele20g0578 527 PANTHER ALDEHYDE DEHYDROGENASE 31 526 - -
Lele20g0578 527 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 53 514 IPR016162 GO:0016491
Lele20g0578 527 Pfam Aldehyde dehydrogenase family 55 514 IPR015590 GO:0016491
Lele20g0578 527 CDD ALDH_F11_NP-GAPDH 47 518 - -
Lele20g0578 527 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 298 488 IPR016163 GO:0016620
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g0578 Lele-ChrLele20 13253947 13258138 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g0578 32 527 Aldehyde Dehydrogenase Gene Family AT2G24270 92.742 0.0 959
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele17g0681 17 18679667 18683593 Lele20g0578 20 13253947 13258138 hybridization
Lele18g0843 18 5274953 5277318 Lele20g0578 20 13253947 13258138 hybridization