Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g0543 ATGAGTAAGCTTGAGAGAGTTTTTTTGTCCAATAATTCATTATCTGGTGAGATTCCTTCAACCCTTGGTTATATCCAGCATCTGGGTCTGCTAGATTTGTCAAGAAATAAGCTTTCTGGTTCAATAGCAGATAATTTTGCCAATCTTTCCCAGTTAAGAAGGCTTTTACTTTATGATAACCAGCTTTGTGGAAGGATACCACCAAGCCTTGGAAAATGTGCCAATTTGGAGATTTTAGACCTATCTCACAACAAGATTTCAGGGGTGATTCCTACAGAAGTTGCAGCATTAACTAGCTTGAAATTGTACTTGAATTTGTCAAGCAATAACTTGGACGGTCCTCTGCCATTAGAGCTCGGCAAAATGGACATGGTTCTAGCTATCGATCTATCTATGAACAAATTCTCTGGTAGAATCCCACCACAGCTTGAAAGTTGCATGGCACTTGAGTACCTTAACCTTTCGGGTAATTCTTTAGAAGGCTCACTTCCATATTCTTTAGGCCACTTGTCTTACATTCTAGCACCAGACGTGTCTTTGAATCGATTGATTGGGGAAAAACCTCAGTCCTTGCAGTTATCTTCGGGTCGGTTTGGAAAGGTCTATAAGGGAGTACTCCAAGACAATACAAGAATATCAGTGAAAGTGTTAACTGCAACCACTGCTGATGATATTTCAGGAAGCTTTAAAAGGGAATGTCAGATCCTAAAGAAGACAAGGCACAGAAACTTAATAGGGATCATCAAAATTTGCAGTAAGCCAGAGTTTAAGGCTCTTGTTCTTCCACTAATGCCAAACGGTAGCCTCGAGAGGCACCTATATCCACCAAGCAGTGGTTTGAGCCAGAGGTTGTATTTGGTTCAGTTGGTGAGGATCTGCAGTGATGTAGCTGAGGGAATGGCCTATCTCCACCATTACTCTCCAGATAAAGTGGTTCATTATGATCTTAAGCCAAATTGTGGAATCTTAAGGCTTGTTAAATGTGATGAAAGCAACCCGTCCAATAACTCAACTTCTTTCAATTCAACACAAGGCATGCTTTTCTTTTTTGTTTGTTTTCAAAATGTCATTTCCATGATTGTTAGCATGGATTCAAACGAAATTGAAATGAGTAAAATAGAGGGATTTGAATCCGTTTCCCCATCTTTCTCCTTAACTTATCCTAAAAGTCAAAATATATACCTCATGGCTGAACTTCATGTTCTTTTGGTGCGATAA 1218 0.3949 MSKLERVFLSNNSLSGEIPSTLGYIQHLGLLDLSRNKLSGSIADNFANLSQLRRLLLYDNQLCGRIPPSLGKCANLEILDLSHNKISGVIPTEVAALTSLKLYLNLSSNNLDGPLPLELGKMDMVLAIDLSMNKFSGRIPPQLESCMALEYLNLSGNSLEGSLPYSLGHLSYILAPDVSLNRLIGEKPQSLQLSSGRFGKVYKGVLQDNTRISVKVLTATTADDISGSFKRECQILKKTRHRNLIGIIKICSKPEFKALVLPLMPNGSLERHLYPPSSGLSQRLYLVQLVRICSDVAEGMAYLHHYSPDKVVHYDLKPNCGILRLVKCDESNPSNNSTSFNSTQGMLFFFVCFQNVISMIVSMDSNEIEMSKIEGFESVSPSFSLTYPKSQNIYLMAELHVLLVR 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g0543 405 PRINTS Leucine-rich repeat signature 73 86 - -
Lele20g0543 405 PRINTS Leucine-rich repeat signature 28 41 - -
Lele20g0543 405 PANTHER OS04G0122200 PROTEIN 2 192 - -
Lele20g0543 405 ProSiteProfiles Leucine-rich repeat profile. 75 96 IPR001611 GO:0005515
Lele20g0543 405 SUPERFAMILY L domain-like 2 191 - -
Lele20g0543 405 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 1 93 - -
Lele20g0543 405 Gene3D Transferase(Phosphotransferase) domain 1 265 336 - -
Lele20g0543 405 ProSiteProfiles Protein kinase domain profile. 187 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele20g0543 405 SUPERFAMILY Protein kinase-like (PK-like) 190 319 IPR011009 -
Lele20g0543 405 Pfam Leucine rich repeat 3 62 IPR001611 GO:0005515
Lele20g0543 405 Gene3D Phosphorylase Kinase; domain 1 198 264 - -
Lele20g0543 405 Gene3D Ribonuclease Inhibitor 1 197 IPR032675 -
Lele20g0543 405 Pfam Leucine Rich repeat 72 88 IPR001611 GO:0005515
Lele20g0543 405 Pfam Leucine Rich Repeat 149 170 IPR001611 GO:0005515
Lele20g0543 405 Pfam Protein tyrosine and serine/threonine kinase 192 317 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g0543 Lele-ChrLele20 13043910 13047182 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g0543 193 318 Receptor kinase-like Gene Family AT5G20480 37.500 4.08e-17 82.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Lele20g0543 PK_Tyr_Ser-Thr 9e-20 CL0016