LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele20g0533	ATGGGGAAACAAAACAAGAACAGTAACCCTAAGGCAACTAATAACAGTATGACACCTACCACCACCACCACCAAGAAACGAACCAGACGAAGTGTCCCCAGAGATTCACCTCTTCAACTTAGCTCAAAATATAGAGGAGTCACAAGACACCGATGGACAGGAAGATATGAAGCTCATTTGTGGGACAAGAATTGTTGGAATGAATGGCAGAACAAGAAAGGACGACAAGGTGCTTATGATGATGAAGAGGCTGCAGCACATGCTTATGATCTAGCAGCGTTAAAATACTGGGGACAAGATACCATACTCAACTTTCCGTTATCGACCTATCTCAACGAAATGAAAGAGATGGAGGGTCACTCAAGGGAAGAATATATTGGATCGTTAAGAAGGAAAAGCAGTGGTTTTTCCCGGGGAGTTTCCAAATACAGAGGCGTGGCAAGGTACATGGGAGGCTCGCATTGGCAGACTACCCAAGAAGAAGCTGCCACTGCATATGATATGGCGGCCATCGAATACCGAGGGCTTAATGCTGTCACTAATTTTGACCTAAGTCGTTACATTAAGTGGCTTAAGCCCAATATTAATAACAGCATCAACATGATTAATAACACATTTGACTACTGGATATACAGAAACATGCACGTATCTCTAATCCCAGGAGAACTAAAAGTCCTGTGGGATCAATGGGGCTTAGAAATACTTATGCTCTTCAGCTTCATTTTGCAGCTTATTCTCACAGTCTATGGCAACAGAAGAAAGGATATTCCAGGTATCTGGATTAGATTAACTGTTTGGTCCTCCTATTTACTTTCTGCTTCACTTGCAAGAATCATCCTAGGCAAGCTAACCGTAATACCAGAAAGTGAACCAGATCAAAGAAATATCAGAAGAGAACTCAAGGCATTATATGCTCCATTACTTCTGGTTCAAATAGGAAACCCGGACGCCATAACTGCTTACTCCATTGAAGATAACAGATTGGGAGTGAGACAAGTTATTGGCTTTGTTTTCCAAGTTGCTATAGTCACATGGATTATTATCAAGAGCTGGACACATTCTTGGCTCTCTTATCTTTACTTGCCATTGCTTGCGTCCGGGTTAATCAAATATGGTGAAGTTGTTTGGGCTTTGAAATCATCTCTCAGTAAGAAATCTGGCATCATCACTGTTGAAGAAATTGACAAAGAAGCAAGCATGCCTGCTTTGTTCAGAATGCTTCCTCATAATGTCCCTTACATAGAACTCATCTTAATGGCTTATTATCGCTTTTTCTCGTTGAAGCCCCACCGCGAGAACTGGCTTTACTTGCCTCTTTATGAGTCTCTTCCTCATATGTCCATTGAAGGTTATGAACCAGAGGAGATTTTTCAAATCACAGATGCTGAACTGAGTTTCATGTATGATGTTCTGTACACTAAAGCACCAATAATCTTCACCAAACAAGGTTGTATTCTTCGTGCTGTGAGTTTCTTCAACTTAGTTCTAACTCTTTGTGGATTCTGTATCATGTTTGAACATCATTTTGATCATCATTGGAAAGCCTGGTTTATAGTTGGGATGTTAGCAGGATCTATGCTTCTTGAGGCTTACCAGATTGCTCAATTACCATTCTCAGATTGGGCAATAATTCAACTGATAAAGCACAGAAATCTCCCACTTGTTACACCATGCTTGAGGATTCTAGGCCACAGAGCAAGCACTTGGAAGAGATGGTCAAATATATTACCACAGTTCAACTTGCTGAGTTTTTGCCTCCATGATAAGCCAATGAAATGCAGCAAGATTCTCAGGTTTCGTAGCTTCGACAAGGCGTTTAAGAAACACAGACACAGGACTCGTTTGAAACTGCCTCAAGAACTGAAAGTTCTGATGGTTCAAGAAATGAAACTCATTGATGCAGAAAGAGGACAAAAGCCATTCAACCAAAGAGGAGAATGGTCACTTGGGAGATATAATTGCCTCAGTGACTTCAAATGGAGTCTTAAAAGAGACTTTGACAAAAGCATCACAATATGGCACATAGCCACGGATATCTGTTATTACTCAGAAGATGATCAATGTGATACAGCAACCGCAGATTCCAAAACCCAGATGGGGAGATTGCTGTCAAATTACATGATGTATCTTCTGGCAATGCGTCCTCATATGTTGTCCATGGCGACAGCAACAATAATCTTTCGACATGCCTTTGACAAGCTCAAGGACTTCGCTCAGAAAGAACGGCTCATAAAAGATGAAGGTGAAGTTTGCAGGATCCTGAGAATGGAAAAAAGTCTTTACTCAATCTCTGAAAGAAGCTCTGAAACTGTGGTTACTTCGAAATGGAATATGTTAAAGGACGCTCAAAGACTTGCATGGAATCTGATGAAGAGAGAAGATAGATGGAATATTATATGCAGTGTTTGGGTGGAGATGTTGTGTTATGCTGCTGCTAATTGTTCTGCAGATGAACATTCTGAGCAAATAAGGAGAGGTGGGGGCTTGATTACTCATGCCTGGATTCTCTTATTACATAAGACTGACAAATATCACATCAGTGACTAA	2547	0.4087	MGKQNKNSNPKATNNSMTPTTTTTKKRTRRSVPRDSPLQLSSKYRGVTRHRWTGRYEAHLWDKNCWNEWQNKKGRQGAYDDEEAAAHAYDLAALKYWGQDTILNFPLSTYLNEMKEMEGHSREEYIGSLRRKSSGFSRGVSKYRGVARYMGGSHWQTTQEEAATAYDMAAIEYRGLNAVTNFDLSRYIKWLKPNINNSINMINNTFDYWIYRNMHVSLIPGELKVLWDQWGLEILMLFSFILQLILTVYGNRRKDIPGIWIRLTVWSSYLLSASLARIILGKLTVIPESEPDQRNIRRELKALYAPLLLVQIGNPDAITAYSIEDNRLGVRQVIGFVFQVAIVTWIIIKSWTHSWLSYLYLPLLASGLIKYGEVVWALKSSLSKKSGIITVEEIDKEASMPALFRMLPHNVPYIELILMAYYRFFSLKPHRENWLYLPLYESLPHMSIEGYEPEEIFQITDAELSFMYDVLYTKAPIIFTKQGCILRAVSFFNLVLTLCGFCIMFEHHFDHHWKAWFIVGMLAGSMLLEAYQIAQLPFSDWAIIQLIKHRNLPLVTPCLRILGHRASTWKRWSNILPQFNLLSFCLHDKPMKCSKILRFRSFDKAFKKHRHRTRLKLPQELKVLMVQEMKLIDAERGQKPFNQRGEWSLGRYNCLSDFKWSLKRDFDKSITIWHIATDICYYSEDDQCDTATADSKTQMGRLLSNYMMYLLAMRPHMLSMATATIIFRHAFDKLKDFAQKERLIKDEGEVCRILRMEKSLYSISERSSETVVTSKWNMLKDAQRLAWNLMKREDRWNIICSVWVEMLCYAAANCSADEHSEQIRRGGGLITHAWILLLHKTDKYHISD	848

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele20g0533	848	Pfam	Domain of unknown function (DUF4220)	266	583	IPR025315	-
	Lele20g0533	848	MobiDBLite	consensus disorder prediction	1	40	-	-
	Lele20g0533	848	ProSiteProfiles	AP2/ERF domain profile.	124	183	IPR001471	GO:0003700\|GO:0006355
	Lele20g0533	848	SUPERFAMILY	DNA-binding domain	142	185	IPR016177	GO:0003677
	Lele20g0533	848	PRINTS	Ethylene responsive element binding protein signature	165	185	IPR001471	GO:0003700\|GO:0006355
	Lele20g0533	848	PRINTS	Ethylene responsive element binding protein signature	44	55	IPR001471	GO:0003700\|GO:0006355
	Lele20g0533	848	SUPERFAMILY	DNA-binding domain	42	108	IPR016177	GO:0003677
	Lele20g0533	848	Pfam	Protein of unknown function, DUF594	791	839	IPR007658	-
	Lele20g0533	848	Gene3D	AP2/ERF domain	140	185	IPR036955	GO:0003700\|GO:0006355
	Lele20g0533	848	Gene3D	AP2/ERF domain	42	108	IPR036955	GO:0003700\|GO:0006355
	Lele20g0533	848	SMART	rav1_2	43	112	IPR001471	GO:0003700\|GO:0006355
	Lele20g0533	848	SMART	rav1_2	142	189	IPR001471	GO:0003700\|GO:0006355
	Lele20g0533	848	FunFam	AP2-like ethylene-responsive transcription factor	42	108	-	-
	Lele20g0533	848	PANTHER	OS01G0798800 PROTEIN-RELATED	227	837	-	-
	Lele20g0533	848	Pfam	AP2 domain	42	98	IPR001471	GO:0003700\|GO:0006355
	Lele20g0533	848	ProSiteProfiles	AP2/ERF domain profile.	43	106	IPR001471	GO:0003700\|GO:0006355
	Lele20g0533	848	MobiDBLite	consensus disorder prediction	1	26	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele20g0533	Lele-ChrLele20	12976703	12983051	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele20g0533	25	187	AP2-EREBP Transcription Factor Family	AT1G72570	56.989	4.15e-59	205

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Lele20g0533		DUF4220	6.3e-46	No_clan

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele17g0634	17	18377779	18383558	Lele20g0533	20	12976703	12983051	hybridization
	Lele18g0883	18	5557029	5564518	Lele20g0533	20	12976703	12983051	hybridization