Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g0532 ATGCCAGATTTAGGAAGCTTATCTCTCTCAGAAGCTCTTGAGCTGCCTCACTGCCCTAATCTGGATGTCCCTGCCGAACCATCTGATCTTACCAGTTCTCTGTACACAATCCCAGTTAAAACCCTTGGTAATTGTTACATTTCCAACCACACTATTCTATTCCCTGTTCTTCAGCAGGACGAGGCCCAGAGTGGAAATGAATTCAGGGTTTCAAAGCGGAGCCGGGGTTCTTTGGATCGGGTCAATAAGGCAGCCAACGACAAGGGTTCAGAGAATCATGTGAAAGATTGGTCTGAGAAGAAGATAGATTCTGGGTTTTGTAGGCTCAGCTGCACTCTTCCATTTCTTGTTGGTGCTCCGAAGATGGTTGAATGTCTTTTTTGTCATCATTTTGTCTACTCCGGGAAGGAGGTTATATGTTCTGTCCGTGGCTGTGAGAGAATCTACCATATGGAATGTGCGAAAGAAGCTGGTGGAATCTCAAATCTCAAAAAATTCAAATGTCCACATCATGCTTGCTTTATTTGCAAACAAAAATTACACTTGCGGTGTGAGCGGTGCACAATGGCATTTCATACTAAATGCGCACCATGGCCAGATGCTGTAATGCTTTCAAAGGATCATCCTGGACGAGCTGTTTGTTGGAGGCATCCTACTGATTGGCGGTTGGATAGAAAGCATGAAGCTTCAACAAGTAACATAGAGGAAGTGTTTTGCCGTTTGCCACTTCCTTATATCAACGAGGAGTTCAAGATTGATTTCACGTGGAAAGACATGGAGAGTAAGGTTGAACCGCCTCCATATGTGCACATTAGACGCAATGTATACCTCGTGAAGAAGAAGCGCAGTGATTCAGATGATGGCGCAGGGTGCACTAGTTGTACTTCTAATTCTACATGTTCTGATGATTGCGTGTGCAGAGTTCAATGTATAAGCTGCTCTAAGGCTTGTCGCTGCTTAGAAAATTGCAATAATCGACCGTTTCGCAAGGATAAAAAGATCAAGATTGTCAAGACTGAACTTTGTGGCTGGGGAGTAGAGGCCGCTGAAACCATCAAGAAAGGCGAATTTGTAATTGAATATATTGGAGAAGTAATAGACGATGCTTTATGTGAAAAAAGGCTTTGGGACATGAAATACAAAGGTGAACAGAATTTCTATATGTGTGAGATTCGGAAAGACTTCACAATAGATGCAACTTTCAAAGGGAATACATCACGCTTTTTAAACCATAGCTGTGATCCCAACTGTATTTTGGAGAAGTGGCAAGTTGACGGTGAAACACGCGTGGGTGTCTTTGCCGCACGCTCAATAGAAGTCGGAGAACCGTTAACATACGATTACAGATTTGTGCAATTTGGACCAGAGGTAAAATGCCACTGTGGTGCTGCAAATTGTCAAGGCTTTTTAGGGACCAAAAAGAAGATTGACAAGGTGAACCTTTGCTGGGGCTCAAAACGGAAGAGAACATATATTACAGTGGGGACCAAAAAGGGAACATCACCTACTTGCATTGCAATAGTAACAGCTGTATGA 1536 0.4316 MPDLGSLSLSEALELPHCPNLDVPAEPSDLTSSLYTIPVKTLGNCYISNHTILFPVLQQDEAQSGNEFRVSKRSRGSLDRVNKAANDKGSENHVKDWSEKKIDSGFCRLSCTLPFLVGAPKMVECLFCHHFVYSGKEVICSVRGCERIYHMECAKEAGGISNLKKFKCPHHACFICKQKLHLRCERCTMAFHTKCAPWPDAVMLSKDHPGRAVCWRHPTDWRLDRKHEASTSNIEEVFCRLPLPYINEEFKIDFTWKDMESKVEPPPYVHIRRNVYLVKKKRSDSDDGAGCTSCTSNSTCSDDCVCRVQCISCSKACRCLENCNNRPFRKDKKIKIVKTELCGWGVEAAETIKKGEFVIEYIGEVIDDALCEKRLWDMKYKGEQNFYMCEIRKDFTIDATFKGNTSRFLNHSCDPNCILEKWQVDGETRVGVFAARSIEVGEPLTYDYRFVQFGPEVKCHCGAANCQGFLGTKKKIDKVNLCWGSKRKRTYITVGTKKGTSPTCIAIVTAV 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g0532 511 Gene3D SET domain 246 490 IPR046341 -
Lele20g0532 511 SMART PostSET_3 455 471 IPR003616 -
Lele20g0532 511 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 502 IPR025787 -
Lele20g0532 511 ProSiteProfiles AWS domain profile. 287 332 IPR006560 GO:0005634|GO:0018024
Lele20g0532 511 CDD SET_ASHR3-like 333 471 - -
Lele20g0532 511 SUPERFAMILY SET domain 257 468 IPR046341 -
Lele20g0532 511 PANTHER SET DOMAIN PROTEINS 77 489 - -
Lele20g0532 511 SMART set_7 332 455 IPR001214 GO:0005515
Lele20g0532 511 Pfam SET domain 343 448 IPR001214 GO:0005515
Lele20g0532 511 ProSiteProfiles Post-SET domain profile. 455 471 IPR003616 -
Lele20g0532 511 FunFam Histone-lysine N-methyltransferase 245 482 - -
Lele20g0532 511 SMART PHD_3 124 172 IPR001965 -
Lele20g0532 511 SMART PHD_3 173 218 IPR001965 -
Lele20g0532 511 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 119 221 IPR013083 -
Lele20g0532 511 ProSiteProfiles SET domain profile. 332 449 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g0532 Lele-ChrLele20 12970630 12975731 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g0532 313 470 C2H2 Transcription Factor Family AT2G23740 35.754 8.52e-24 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lele20g0532 SET 4.3e-19 No_clan