Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g0516 ATGCCTCCTCCTAGTCCTCCGATTCATCACCATGAACAAACCCAACCAAAGCCAGGCCCCAAGCTCCTCTCAATCCTCCTTAAAGCCGTCATCATGACCTTTCTCACCTCCGTCTTTTTCATCTTCCTTGGTTTCGCCGCCTTCGTCCTCCTCCATCTCTGCTTCATCGGCGGCATCCTCCACCACATCCGCTCCCGCCTCACCATCCAACTCGGAGCTTCATCCAATGGAATCGCGCCGCGTGACGTCAAGAAGCTTCCCCACTTCCGGGTTTCTAGAGGGACCGAACCCGGACCTGAGTCCCAATGCGTCGTCTGCTTGGACGGCTACAGGAGCGGCCACTGGTGCAGAAAGCTCGCCGGATGTGGCCATGTGTTCCACCGGAGATGTGTGGATACGTGGTTGGTGAAGGTGGCTGCGTGTCCCACATGCAGGACACCTGTTCGATCAAATGCAGGGAAAGATGTAGGTTCGGCTCTAGATGTCAATAGAGAGGAGGCTATGCGACATCGAACATCCAGTAGGGACAATGCTTTCAGGATTTTTTAG 549 0.5501 MPPPSPPIHHHEQTQPKPGPKLLSILLKAVIMTFLTSVFFIFLGFAAFVLLHLCFIGGILHHIRSRLTIQLGASSNGIAPRDVKKLPHFRVSRGTEPGPESQCVVCLDGYRSGHWCRKLAGCGHVFHRRCVDTWLVKVAACPTCRTPVRSNAGKDVGSALDVNREEAMRHRTSSRDNAFRIF 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g0516 182 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 154 IPR013083 -
Lele20g0516 182 ProSiteProfiles Zinc finger RING-type profile. 103 145 IPR001841 -
Lele20g0516 182 SUPERFAMILY RING/U-box 99 150 - -
Lele20g0516 182 SMART ring_2 103 144 IPR001841 -
Lele20g0516 182 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 10 166 - -
Lele20g0516 182 Pfam Ring finger domain 102 145 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g0516 Lele-ChrLele20 12837076 12837624 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g0516 17 149 C3H Transcription Factor Family AT2G18670 47.015 1.45e-31 110