Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g0486 ATGGGTCGAGCTCCATGCTGTGACAAAGCGAACGTGAAGAAAGGACCTTGGTCTCCAGAAGAGGATGCTATACTCAAAGCTTATATCGATAAACATGGAACTGCAGGCAACTGGCTTGCTCTTCCTCAAAAAATTGGGCTGAAGAGGTGTGGGAAAAGTTGCAGACTAAGATGGCTAAATTACCTGAGGCCCAATATCAAGCATGGAGGTTTCACAGAAGAAGAAGACAACATCATTAGCAGCCTCTACATTAGCATTGGCAGCAGGTGGTCCGTTATTGCGGCTCAGCTTCCTGGAAGAACAGACAACGACATCAAGAATTATTGGAACACAAGACTGAAGAAGAAACTACTTGGTAGGCGAAAATTAGCAGAAAACAGTTCAGATCACGACAAATCTAATAATTCCGATCACATTCTCAGTAACTCGGCTCTCGAAAGGCTTCAACTTCACATGCAACTTCAAAACCATAATTTCTCTTTCGACAACAATCCTTCCCTCTGGCCTAAGTTGCATCCTCTCCAACAAAAAGTAATCCACAACACCCTACAATCCCTCAACCATACCTCTGATTTCACAACCATACCACAAAAAGATCATAATCAACTTCACGAACCAGCTTCTGCTAATTGTCCTACTGGTAATGATGCAGTTGTTCAACCAGAAGGTGTAAAGATCAGCAGCAACTCGGCGAGCTCCGGTAATCCGGCGGACATGGGCCGGATTGATGAGTTAGATATGGGAATGGATCGAGTTTCTGCACTGCAAACTGAGCTTAATGGCATTCTTATGAGTGGTTACGTGACATCATCGCGGAAGAAGCAGGAGGAGCAGGTAGGTGGTGAATATGGTTGTTTCGGAGAGATCATGAGTGGTTCGACGAAGGATAATTTGAGCTGGTGGTCCAATGATTTTGATGCCAAATCAGCATTATCCTCGAACTCTGGGGATTCAACTACTACCACTACCAGCACTCCTCAGATTTTTCAGCCAGATGATTATCAGGGGATGTTTCAAGATTATGAGCTAGGTTATATTTTGTAG 1044 0.4406 MGRAPCCDKANVKKGPWSPEEDAILKAYIDKHGTAGNWLALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFTEEEDNIISSLYISIGSRWSVIAAQLPGRTDNDIKNYWNTRLKKKLLGRRKLAENSSDHDKSNNSDHILSNSALERLQLHMQLQNHNFSFDNNPSLWPKLHPLQQKVIHNTLQSLNHTSDFTTIPQKDHNQLHEPASANCPTGNDAVVQPEGVKISSNSASSGNPADMGRIDELDMGMDRVSALQTELNGILMSGYVTSSRKKQEEQVGGEYGCFGEIMSGSTKDNLSWWSNDFDAKSALSSNSGDSTTTTTSTPQIFQPDDYQGMFQDYELGYIL 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g0486 347 Gene3D - 70 140 - -
Lele20g0486 347 FunFam Transcription factor RAX3 7 68 - -
Lele20g0486 347 CDD SANT 71 113 IPR001005 -
Lele20g0486 347 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Lele20g0486 347 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Lele20g0486 347 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Lele20g0486 347 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
Lele20g0486 347 CDD SANT 16 62 IPR001005 -
Lele20g0486 347 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Lele20g0486 347 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Lele20g0486 347 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 66 IPR017930 -
Lele20g0486 347 Gene3D - 7 68 - -
Lele20g0486 347 PANTHER OS09G0431300 PROTEIN 1 260 - -
Lele20g0486 347 MobiDBLite consensus disorder prediction 311 331 - -
Lele20g0486 347 SMART sant 13 64 IPR001005 -
Lele20g0486 347 SMART sant 67 115 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g0486 Lele-ChrLele20 12526676 12528931 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g0486 1 306 MYB Transcription Factor Family AT5G57620 53.605 3.77e-98 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele20g0486 Myb_DNA-binding 1.9e-13 CL0123