Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g0477 ATGAACAGCTTTGATCCTCAGAGAGAAGAATCTTCCTCCTTCAAACCAACATATCAGAATATTAATAACAATAATCTTATGGCTAGTTCTGCAACTCCGTCTTCTTCTTCTTCTACTTATTCGGCTTCTTTCTCTGCTGCTAATAACCCTACCAAACCCAATGCTTCCCACTTTACTCACAATAATAAGTTCCATGGCTTCCCTGAACTTGACGACCACGATCTCGCGGCCAACGTTGTCCCTGCCGTGACTGTGGTCTTGGAGGGCCGTTCCATCTGCCACCTCATCAACCTCCACCACCATGCCAGCTACCACAGCCTCGCCAAGGCTCTCCGTCAGATGCTTGTCGTCGACCAGGGAATGGCGGCTGATGACGGCGATCTTGATCTTTCCAATGCCATTCCAGGTCATCTTATTGCTTATGAAGATATGGAGAATGATCTTCTTCTCGCAGGCGATCTCAGCTGGAAGGATTTCGTGCGTGCGGCGAAGAGAATTCGAATAATTCCAGCCAAAGAAAACTCAAGGAAGGGCGCAAGAAGAGCTTGA 549 0.4791 MNSFDPQREESSSFKPTYQNINNNNLMASSATPSSSSSTYSASFSAANNPTKPNASHFTHNNKFHGFPELDDHDLAANVVPAVTVVLEGRSICHLINLHHHASYHSLAKALRQMLVVDQGMAADDGDLDLSNAIPGHLIAYEDMENDLLLAGDLSWKDFVRAAKRIRIIPAKENSRKGARRA 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g0477 182 Pfam AUX/IAA family 63 174 IPR033389 -
Lele20g0477 182 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 78 173 IPR003311 GO:0005634|GO:0006355
Lele20g0477 182 ProSiteProfiles PB1 domain profile. 80 173 IPR000270 GO:0005515
Lele20g0477 182 MobiDBLite consensus disorder prediction 1 60 - -
Lele20g0477 182 Gene3D - 77 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g0477 Lele-ChrLele20 12484646 12486169 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g0477 18 173 B3 DNA Binding Superfamily AT1G19220 26.708 5.15e-06 44.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lele20g0477 AUX_IAA 4.7e-12 CL0072