Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g0473 ATGGACTCTTCTTCTTCTTCTTCCTCTTCTAACTGGCTCGCGTTCTCTCTCTCCAACCCCTTATCTTCCTCCTCCTCCCACTTCCCTCTCTTCCCTTCCTTCACCTCTCCTTCCCCCACCCCCATTCTCTCTCTCACAGGTAACAGCACCGTGCCGGCGGATACCAAGGATGGTGCGGTCACAGGAGCACCTACTAGCCTCTCCATGTTCACCGGGGGCCCTAAGTTTGAGGACTTCCTCGGCGGAGCGGCCGCCGCCGCCGCAGCGCCAACAGCTCCTACGCCTCCGCAGTTCTCTGCCGACAACACGCTGAGCTCGGTGGTGGACAACGAGATATACGATTCAGAGTTGAAGACGATAGCCGCCAGCTTCCTTCGCGGCTTCGCTTCCGGAGGAGGCCAAGGCGAGCCGCAACAGAAGCAGACGCAGCTGATTCCGGCAGAACCGTCCCCAAAGAAGAACGTCGACACCTTCGGCCAACGCACCTCCATCTACCGCGGCGTCACACGGCATAGATGGACGGGAAGATACGAAGCTCATCTATGGGATAACAGTTGCAGAAGGGAAGGGCAAAGTCGGAAAGGAAGACAAGGTGGCTACGATAAGGAAGAGAAGGCTGCCAGAGCTTATGATCTTGCCGCCCTCAAGTACTGGGGTCCGACCACCACCACGAACTTTCCGATTTCGAACTACCAGAAGGAACTGGAAGAGATGAAGAACATGACCAGGCAGGAGTTTGTTGCTTCTCTTCGAAGACATCACCAGCATGGCCGATGGCAGGCAAGAATAGGCAGGGTCGCCGGAAACAAGGACCTCTACCTTGGCACTTTCAGCACTCAAGAGGAAGCAGCGGAGGCGTATGATATAGCGGCGATAAAGTTCAGAGGAATAAATGCAGTGACCAACTTCGACATGAGCCGCTACGACGTTAAGAGCATTGCCAACAGTAGCCTTCCCATTGGTGGACTCTCCGGAAAGACCAAGAACTCGACGGATTCTTCTCCGTCTGACCACCACGCCAAGAGCCCCGACGGAGCTCAATCTGCCGCCACCGACGACCGAGACATCTCTTCCTCCAACTCCTCGGTCACTTTCGCATCACAACCACCACCACCACCACCACATTCAAGCTCTAACAATAATTCTCTCACCTTCGCCATACCCATCAAACAGGACGCTTCTTCAGATCATCATTACTGGTCCTCCATTATCGCCGGTTGCAACAAAAACCCTTCCTTGACGATGCAACCATCTTCTTCCACCACCAATGGCTCCGTGACATCTGTCCTACCCTTCAACATGGACCTCTCTACAAGTACGAGCAGTATGGAAGGCGGCAACAAAAACAACAATAATAATAATGGGTTTTTCAGTGGAGGCATGTTTGTTCATCAACAACAGAGTGGGAATAATAATGGTGGTGGTGGTGGTTCATCTTCTTCTGGTTCGAGTTCTTCATTGATGATCCCATTGGCCACACCCATTGCTTTAAATAGTAACCATAGTTATGAGAGCTCTTCTGGTTATGGAAACTGGAGCATCATTGGTCCTACCCTGCACACCTTCCAAACCCATGCAAAACCCAGTCACTTTCAAACCCCAATCTTCGGCATCGAATGA 1620 0.5259 MDSSSSSSSSNWLAFSLSNPLSSSSSHFPLFPSFTSPSPTPILSLTGNSTVPADTKDGAVTGAPTSLSMFTGGPKFEDFLGGAAAAAAAPTAPTPPQFSADNTLSSVVDNEIYDSELKTIAASFLRGFASGGGQGEPQQKQTQLIPAEPSPKKNVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQGGYDKEEKAARAYDLAALKYWGPTTTTNFPISNYQKELEEMKNMTRQEFVASLRRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGINAVTNFDMSRYDVKSIANSSLPIGGLSGKTKNSTDSSPSDHHAKSPDGAQSAATDDRDISSSNSSVTFASQPPPPPPHSSSNNNSLTFAIPIKQDASSDHHYWSSIIAGCNKNPSLTMQPSSSTTNGSVTSVLPFNMDLSTSTSSMEGGNKNNNNNNGFFSGGMFVHQQQSGNNNGGGGGSSSSGSSSSLMIPLATPIALNSNHSYESSSGYGNWSIIGPTLHTFQTHAKPSHFQTPIFGIE 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g0473 539 MobiDBLite consensus disorder prediction 130 157 - -
Lele20g0473 539 PRINTS Ethylene responsive element binding protein signature 165 176 IPR001471 GO:0003700|GO:0006355
Lele20g0473 539 PRINTS Ethylene responsive element binding protein signature 286 306 IPR001471 GO:0003700|GO:0006355
Lele20g0473 539 ProSiteProfiles AP2/ERF domain profile. 243 304 IPR001471 GO:0003700|GO:0006355
Lele20g0473 539 CDD AP2 163 229 IPR001471 GO:0003700|GO:0006355
Lele20g0473 539 Gene3D AP2/ERF domain 249 306 IPR036955 GO:0003700|GO:0006355
Lele20g0473 539 Gene3D AP2/ERF domain 164 229 IPR036955 GO:0003700|GO:0006355
Lele20g0473 539 Pfam AP2 domain 164 219 IPR001471 GO:0003700|GO:0006355
Lele20g0473 539 Pfam AP2 domain 250 296 IPR001471 GO:0003700|GO:0006355
Lele20g0473 539 SUPERFAMILY DNA-binding domain 252 306 IPR016177 GO:0003677
Lele20g0473 539 MobiDBLite consensus disorder prediction 437 485 - -
Lele20g0473 539 MobiDBLite consensus disorder prediction 351 365 - -
Lele20g0473 539 FunFam AP2-like ethylene-responsive transcription factor ANT 163 229 - -
Lele20g0473 539 CDD AP2 251 306 IPR001471 GO:0003700|GO:0006355
Lele20g0473 539 MobiDBLite consensus disorder prediction 319 382 - -
Lele20g0473 539 SMART rav1_2 251 310 IPR001471 GO:0003700|GO:0006355
Lele20g0473 539 SMART rav1_2 164 233 IPR001471 GO:0003700|GO:0006355
Lele20g0473 539 MobiDBLite consensus disorder prediction 134 148 - -
Lele20g0473 539 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 123 393 - -
Lele20g0473 539 SUPERFAMILY DNA-binding domain 163 229 IPR016177 GO:0003677
Lele20g0473 539 ProSiteProfiles AP2/ERF domain profile. 164 227 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g0473 Lele-ChrLele20 12453352 12456321 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g0473 111 417 AP2-EREBP Transcription Factor Family AT5G57390 62.573 6.28e-130 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Lele20g0473 AP2 1e-09 CL0081