Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g0472 ATGGATTCGTCTTCAGAAGGTGCCACACTCGATCCGTCTAAATGCAGCAAGTTGAGCATGGAAGAAAAAAGACAACTTATCTATGAGATATCTAAGTCCCAGGGTGCTTCAGAGATTTTACAGTCATGGAGCCGACAAGAGATTTTGAAAATCCTGTGTGCAGAGATGGGAAAAGAAAGGAAGTACACTGGCTTGACAAAGTTGAAAATCATAGAAAATCTTTTAAAAATTGTCTCTGAAAAGAAGTCAGGAGACCAGGAAATTACAACAGATCTTGAACCACTTTCTCCTGCAAATGAGCAGAAACCAGCTAAAAGGCAGAGAAAAGCAGAGAATCCGTCTCGATTGCCTCTTCCAGCAAAAAATGGTCTAGTCACTAATGGTGATGGAGATTCAAGTAGTAGTAGTACCACATACTGTAAAAATTCAGCTTGCAAAGCTACCCTAAGTCAAGAAGATGCATTTTGCAAAAGATGTTCGTGCTGCATTTGTCATCAATATGATGATAACAAAGATCCTAGCCTGTGGTTAATATGTAACTCTGACCCTCCATTTTCTGGTGTTTCTTGTGGTTTGTCATGCCATCTTGAATGTGCTTTAAAACATTATGGTTCCGGCATTGCCAAAAATGGAGTGCATCCCAAGCTTGATGGGGGTTTCTACTGTGTCTCATGTGGGAAAGTAAATGATCTGCTCGGATGCTGTAGAAAACAACTGTCAGTGGCAAAGATTACCAGACGTGTGGACATTCTTTGCTATCGCGTCTCCTTGACCCAAAAACTTTTACATGGGACTGAAAAGCATAAAAAACTTCATGAAATAATTGATGAGGCTGTGAATAAACTTGAACCTGAGGTTGGCCCCTTAACTAGCTCACCAGTGAAGATCGGTAGGGGAATTGTGAGCAGACTTTCATCAGGACCAGAGGTCCAGAAACTCTGTGGTTCTGCTTTGGAATCGCTGGATTCATTACTTTCTGAAATGCTCTTGCCTCCATCACCCGGTCCGACTGATCAAGATACAAAATTGGTCTCTTCAGATATGGTGGGATTTGAAGATGTCACTGCAACATCACTCACTGTAGTTTTGGGTTCTGAAAATCAATCTGGAGAAAATATTGTTGGTTACAGCTTGTGGCATCGTGCAGCTCATGATGTGGACTATCCCTTGGACTCAAGTTGCACATTGCATCTACCAGACAGAAGGTTCACTATCAGGGATCTAATTCCAGCCACAGAATACATCTTCAAAGTTGTCGCCTTCAATCCTTCGACGGAGTTGAGCACGTGTGAAGCCCGTGTTTCTACTGAGCAAGTCGAGGAAGAGGCGCCCAACTGCTCAACAACAGAAAGAAGTCAGAGCCCAGTAACAAACTGTAGCAGCCTTTCCAATCCTTCTTCATTAGAAGATGAAACTAACAACAGTAATCCGTATTCTAACCACCAGACTGATAACCGAGTGGAGAATCGTCTTACTGATCAAAAGGACACTGACAAGCTTGCTTCAGGAACTTTATCCAATGATCCCACTAACTGTTCTAACATAGGTGAAGGTAAACTTCCAGCAGATTCTGATTCCTTATCAGACAAGGTACATGCTGTAGCAAAGACTGGCCCTTTACCCTGTACTGATGTGTTAAAAGCTGTAAAAGAGCACTCACCGGAGGACCAAGTCACTGAGGACATGAGCACTGATAATGGGCCTAATTCGCCGGCTCAGGCTGGGAGGGACAATGTGTTATTACCAGGTAGCTCAGAGGAAGGCCTTCCCAATACTCCATGCAAGTTGGAAATGCTTATGGATGGGCCAGGAAAAAAGGGGAGGTCAAAATCCAGTGGTAAGGCTAGGGCCAAGGCCAAGGATCAAGAAAATGAGTCTGGGAAGAGACAATGCCCTCAAGATGGAAGCAAATCAAAGAAGAGAAAAGTTGAAAGGCAGCAAGAAGTTGAGGAGTGTGATGCAGATGGGCTTTCTTCTGACGGGGATTTTGAGTATTATGTGAAGGTGATTAGAAGGTTAGAGTGTGAAGGACATATAGAGAAGAACTTTAGGCAGAAATTTCTGACTTGGTACAGCTTAAGAGCAACGGCCCAAGAAATTAGGGTTTTGAAAGTATATATTGATACATTTATTGAAGATCCAACATCTCTTGCAGAGCAACTTGTGGACACCTTCTCAGACTGCTTATCAATCAAGAGAACATCCATGGTGCCACCTGGGTTCTGCATGAAGCTTTGGCATTAA 2244 0.43 MDSSSEGATLDPSKCSKLSMEEKRQLIYEISKSQGASEILQSWSRQEILKILCAEMGKERKYTGLTKLKIIENLLKIVSEKKSGDQEITTDLEPLSPANEQKPAKRQRKAENPSRLPLPAKNGLVTNGDGDSSSSSTTYCKNSACKATLSQEDAFCKRCSCCICHQYDDNKDPSLWLICNSDPPFSGVSCGLSCHLECALKHYGSGIAKNGVHPKLDGGFYCVSCGKVNDLLGCCRKQLSVAKITRRVDILCYRVSLTQKLLHGTEKHKKLHEIIDEAVNKLEPEVGPLTSSPVKIGRGIVSRLSSGPEVQKLCGSALESLDSLLSEMLLPPSPGPTDQDTKLVSSDMVGFEDVTATSLTVVLGSENQSGENIVGYSLWHRAAHDVDYPLDSSCTLHLPDRRFTIRDLIPATEYIFKVVAFNPSTELSTCEARVSTEQVEEEAPNCSTTERSQSPVTNCSSLSNPSSLEDETNNSNPYSNHQTDNRVENRLTDQKDTDKLASGTLSNDPTNCSNIGEGKLPADSDSLSDKVHAVAKTGPLPCTDVLKAVKEHSPEDQVTEDMSTDNGPNSPAQAGRDNVLLPGSSEEGLPNTPCKLEMLMDGPGKKGRSKSSGKARAKAKDQENESGKRQCPQDGSKSKKRKVERQQEVEECDADGLSSDGDFEYYVKVIRRLECEGHIEKNFRQKFLTWYSLRATAQEIRVLKVYIDTFIEDPTSLAEQLVDTFSDCLSIKRTSMVPPGFCMKLWH 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g0472 747 MobiDBLite consensus disorder prediction 498 514 - -
Lele20g0472 747 PANTHER VIN3-LIKE PROTEIN 2-RELATED 8 747 IPR044514 GO:0010048|GO:0040029
Lele20g0472 747 CDD PHD_VIN3_plant 160 225 - -
Lele20g0472 747 Gene3D Immunoglobulins 347 460 IPR013783 -
Lele20g0472 747 ProSiteProfiles Fibronectin type-III domain profile. 344 442 IPR003961 GO:0005515
Lele20g0472 747 CDD FN3 349 422 IPR003961 GO:0005515
Lele20g0472 747 MobiDBLite consensus disorder prediction 436 485 - -
Lele20g0472 747 MobiDBLite consensus disorder prediction 436 526 - -
Lele20g0472 747 MobiDBLite consensus disorder prediction 551 655 - -
Lele20g0472 747 MobiDBLite consensus disorder prediction 601 652 - -
Lele20g0472 747 SUPERFAMILY Fibronectin type III 352 423 IPR036116 GO:0005515
Lele20g0472 747 MobiDBLite consensus disorder prediction 86 136 - -
Lele20g0472 747 Pfam PHD - plant homeodomain finger protein 140 259 IPR032881 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g0472 Lele-ChrLele20 12432240 12436494 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g0472 1 474 PHD Gene Family AT4G30200 55.138 1.10e-164 487