Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g0471 ATGAAGTATCTCAGAACCAGTAGCCTCAAGAGGCTCTTCTCCTTGAAACGATGCAGTTTCACTGAGGAAGTTCCCACCGGTGATGAAAAAGTTGAGAACTTGCAGGTTCTTCCAGCGCCCGAACAGCCTTCTTCTCAAAGACCCACTTGGAAATGCTTCTCCTACGAAGAACTCTTCGATGCCACCAATGGCTTCAGCTCAGAAAATCTGGTCGGAAAAGGAGGCTATGCGCAGGTTTACAAGGGGACATTGAAAAATGGGTACGAGATTGCAGTGAAGAGGCTCACAAGAACTTATTCAAGCGATGAGAGGAAAGAGAAGGAGTTCTTGACAGAGATTGGCACAATCGGTCATGTTAATCATCCAAATGTTCTGCCTCTCCTCGGTTGTTGTATTGACGAAGGGCTTTACCTCGTCTTCGAGCTTTCCTCCAAAGGTTCTGTTGCCTCTCTTCTTCATGTTGAAGATCAAAGCTTGCCTCCCATGGACTGGAAAACCAGATATAAGATAGTTCTTGGGACTTCTCGTGGCCTCCATTACTTGCACAAAGGCTGCAAAAGAAGGATAATCCATAGAGACATCAAGGCCTCAAACATTCTATTAACTTCAGATTTTGAACCACAGATATCTGATTTCGGGCTGGCAAAATGGCTTCCGAATCAATGGACTCATCATTCAATAGCCCCAATAGAAGGGACATTTGGGCATTTGGCACCAGAGTACTATTTACATGGAATAGTGGATGAGAAAACAGACGTGTTTGCTTTTGGGGTTTTCTTGCTTGAAGTCATCTCAGGGAGGAAACCGGTGGACGGTTCTCACCAAAGCTTACACAGCTGGGCAAAACCATTATTGAACAAAGAGGAAACTGAAAAGCTGGTGGATCCAAAGCTAGAAGGGGCCTATGATTTAGCTCAGTTACAAAGACTTGCTTTTGCAGCTTCTCTCTGTATTCGAGCTTCTGCAACTTGGCGACCTACCATGAGCCAGGTATTAGAGGTAATTGAGGAGGGAGAAATGGACAAGGAGAAGTGGAAGATGCCAGAGGAGGAAGAAGAGCAAGAAGAAGAATTCTGGGGATTTGAGGATCTTGAATATGAATATGAAAGTTCACTCTCTCTCTCTCTACCAGACTCCATTGGAAGCTCTTAA 1152 0.4479 MKYLRTSSLKRLFSLKRCSFTEEVPTGDEKVENLQVLPAPEQPSSQRPTWKCFSYEELFDATNGFSSENLVGKGGYAQVYKGTLKNGYEIAVKRLTRTYSSDERKEKEFLTEIGTIGHVNHPNVLPLLGCCIDEGLYLVFELSSKGSVASLLHVEDQSLPPMDWKTRYKIVLGTSRGLHYLHKGCKRRIIHRDIKASNILLTSDFEPQISDFGLAKWLPNQWTHHSIAPIEGTFGHLAPEYYLHGIVDEKTDVFAFGVFLLEVISGRKPVDGSHQSLHSWAKPLLNKEETEKLVDPKLEGAYDLAQLQRLAFAASLCIRASATWRPTMSQVLEVIEEGEMDKEKWKMPEEEEEQEEEFWGFEDLEYEYESSLSLSLPDSIGSS 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g0471 383 Gene3D Phosphorylase Kinase; domain 1 36 142 - -
Lele20g0471 383 Pfam Protein tyrosine and serine/threonine kinase 68 333 IPR001245 GO:0004672|GO:0006468
Lele20g0471 383 Gene3D Transferase(Phosphotransferase) domain 1 144 361 - -
Lele20g0471 383 SMART serkin_6 65 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele20g0471 383 CDD STKc_IRAK 71 337 - -
Lele20g0471 383 ProSiteProfiles Protein kinase domain profile. 65 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele20g0471 383 ProSitePatterns Protein kinases ATP-binding region signature. 71 93 IPR017441 GO:0005524
Lele20g0471 383 ProSitePatterns Serine/Threonine protein kinases active-site signature. 189 201 IPR008271 GO:0004672|GO:0006468
Lele20g0471 383 FunFam Putative receptor-like serine/threonine-protein kinase 144 360 - -
Lele20g0471 383 SUPERFAMILY Protein kinase-like (PK-like) 43 335 IPR011009 -
Lele20g0471 383 PANTHER OS08G0249100 PROTEIN 39 364 - -
Lele20g0471 383 FunFam Putative receptor-like serine/threonine-protein kinase 33 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g0471 Lele-ChrLele20 12420919 12424447 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g0471 37 358 Receptor kinase-like Gene Family AT1G71830 42.169 3.26e-73 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Lele20g0471 PK_Tyr_Ser-Thr 5.4e-40 CL0016