Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g0469 ATGGAGTGGGACAGCAATTCCGATCTCAGCGGGGATGACGACGAGAGTTTCATGCTCGACGATGCTGGTCCTCTTCCCTTCCCCGTCGGGAACTTGCTCCAAACGGCGCCGTGTGGGATTGTCGTCACTGACGCTCTCGAGCCGGACCATCCCATTATTTATGTCAATACGGTGTTCGAGATGGTTACTGGGTATCGGGCAGAGGAAGTGCTTGGTCGCAACTGCCGTTTCTTGCAGTGTCGAGGCCCATTTGCTAAGAGAAGGCATCCATTAGTGGACTCATTAGTAGTTTCAGAAATTAGGAGATGCCTAGAAAAGGGGATCGAATTCCAAGGTGAGTTGCTGAACTTTAGGAAAGATGGATCTCCACTGATGAACAGATTGCGGTTGACACCTATATATGGGGATGATGAGACTATAACACATGTCATTGGAATTCAGTTCTTCGCAGAGGCTAACATTGATCTTGGTCCTGTCCCAAGTTCTACAATGAAGGAATCTGCTAAGTCATCTGATCAATTTCATTCCTCCGCCATTGCCTCATTACGTCCTCCTCCAACAGGGGACCGTAATGTTTCTCGTCGAGTTTGTGGGATACTGCAGTTGAGTGAGGAGGTGTTGTCTCTCAAGATACTTTCTCGCCTAACTCCAAGAGATATTGCGTCAGTTGGCTCTGTTTGCAGGCAATTGTATGAAATAACAAGAAATGAAGATCTTTGGAGAATGGTATGTCAAAATGCATGGGGAAGTGAAACTACTCGTGTTTTAGAGACTGTGCCTGCTGCAAGAAGACTTGGATGGGGTAGGCTGGCAAGGGAACTGACAACTCTTGAAGCTGCAGCATGGAGAAAGTTGACTGTTGGGGGTGCTGTTGAACCCTCGCGCTGTAATTTTAGTGCTTGTGCAGTTGGTAATAGAGTTGTATTATTTGGTGGTGAAGGGGTTAACATGCAACCTATGAATGACACCTTTGTACTAGATCTCAATTCTCGTAATCCTGAGTGGCAACACGTCCAGGTGAGCTCTCCTCCTCCAGGTCGTTGGGGCCATACACTTTCTTGTGTTAATGGCTCTCATTTGGTTGTATTTGGAGGCTGTGGAAGGCAGGGCTTGCTCAATGATGTGTTTGTGCTGGACCTGGATGCAAAGCCTCCGACTTGGCGTGAAATTTCTGGATTGGCACCACCACTTCCCAGATCATGGCATAGCTCCTGTACTCTTGATGGAACTAAGTTGATTGTTTCTGGTGGCTGTGCAGATTCTGGAGTGCTTTTGAGCGATACATTCCTGCTTGATCTGTCAATGGAGAAACCTGTTTGGAGAGAGATACCAGTTTCATGGACCCCGCCTTCTCGTCTGGGCCACACACTGTCTGTTTATGGTGGTAGGAAAATACTGATGTTTGGGGGTCTGGCCAAGAGTGGGCCATTGCGGTTCCGCTCTAGTGATGTATTCACGATGGATTTGAGTGAGGAGGAGCCATGTTGGAGATGTGTAACTGGTAGTGGAATGCCCGGTTCTGGGAATCCTGGGGGCATCGCTCCTCCTCCTAGACTTGATCATGTGGCTGTCAGTCTTCCTGGCGGGAGAATTCTGGTATTTGGAGGGTCTGTTGCAGGTCTTCATTCTGCCTCCCAGCTCTACATACTGGACCCAACTGATGAGAAACCTACTTGGAGAATCTTAAATGTACCGGGGGGGCCCCCGAGATTTGCTTGGGGACATAGCACTTGTGTTGTTGGAGGGACAAGAGCAATTGTATTGGGTGGTCAGACTGGAGAGGAATGGATGCTAAGCGAGCTCCATGAGCTTTCTCTGGCAAATTCTGTGATCTAA 1836 0.4847 MEWDSNSDLSGDDDESFMLDDAGPLPFPVGNLLQTAPCGIVVTDALEPDHPIIYVNTVFEMVTGYRAEEVLGRNCRFLQCRGPFAKRRHPLVDSLVVSEIRRCLEKGIEFQGELLNFRKDGSPLMNRLRLTPIYGDDETITHVIGIQFFAEANIDLGPVPSSTMKESAKSSDQFHSSAIASLRPPPTGDRNVSRRVCGILQLSEEVLSLKILSRLTPRDIASVGSVCRQLYEITRNEDLWRMVCQNAWGSETTRVLETVPAARRLGWGRLARELTTLEAAAWRKLTVGGAVEPSRCNFSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSRNPEWQHVQVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVSWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGSGNPGGIAPPPRLDHVAVSLPGGRILVFGGSVAGLHSASQLYILDPTDEKPTWRILNVPGGPPRFAWGHSTCVVGGTRAIVLGGQTGEEWMLSELHELSLANSVI 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g0469 611 FunFam Adagio protein 1 196 243 - -
Lele20g0469 611 FunFam Putative LOV domain-containing protein 477 610 - -
Lele20g0469 611 Pfam PAS domain 37 147 IPR000014 -
Lele20g0469 611 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 27 607 - -
Lele20g0469 611 Gene3D - 194 243 - -
Lele20g0469 611 CDD PAS 36 146 IPR000014 -
Lele20g0469 611 FunFam Adagio protein 1 27 158 - -
Lele20g0469 611 SUPERFAMILY F-box domain 190 259 IPR036047 GO:0005515
Lele20g0469 611 Pfam Kelch motif 519 566 IPR011498 GO:0005515
Lele20g0469 611 Pfam Kelch motif 452 503 IPR011498 GO:0005515
Lele20g0469 611 SUPERFAMILY Galactose oxidase, central domain 282 596 IPR011043 -
Lele20g0469 611 Pfam Galactose oxidase, central domain 359 406 - -
Lele20g0469 611 SUPERFAMILY PYP-like sensor domain (PAS domain) 32 147 IPR035965 -
Lele20g0469 611 Gene3D PAS domain 22 158 - -
Lele20g0469 611 Pfam Galactose oxidase, central domain 295 345 - -
Lele20g0469 611 Pfam F-box-like 208 245 IPR001810 GO:0005515
Lele20g0469 611 FunFam Putative LOV domain-containing protein 272 476 - -
Lele20g0469 611 ProSiteProfiles PAS repeat profile. 32 107 IPR000014 -
Lele20g0469 611 Gene3D - 498 610 IPR015915 GO:0005515
Lele20g0469 611 Gene3D - 272 497 IPR015915 GO:0005515
Lele20g0469 611 TIGRFAM sensory_box: PAS domain S-box protein 32 146 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g0469 Lele-ChrLele20 12406588 12411080 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g0469 29 148 AGC Kinase Gene Family AT5G58140 31.667 2.07e-13 71.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele17g0564 17 17794171 17796724 Lele20g0469 20 12406588 12411080 hybridization
Lele18g0950 18 6127804 6132374 Lele20g0469 20 12406588 12411080 hybridization