Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g0468 ATGGCGGCCGGCAAGGCGGCGATCAGCCTCGAGGAGATCAAGAACGAGGCCGTTGATCTGATTGTGTTTGGATTTTTATTTTCTCGCGCTCTTTCACTTGGTTCTGTTTTAGCTTTCTTTTCTACTACCTTTCCCCTAACTCCGATTCATCAGGGTCTTCTTCTCACTCTGTTTTCGTGTTCCCAGGTCCTCAGAGATGGTAAGTGGACCGAGGAAGAGGCTGCAATCCTAGTGCCGGGTGACATCATAAGCGTCAAGCTTGGTGATATAATTCCCGCAGATGCTCGTCTTCTTGAGGGTGATCCTTTGAAGGTAGACCAATCTGCTCTTACTGGTGAATCCCTCCCTGTGACCAAGAACCCTGGGGATGAAGTTTTCTCAGGATCAACTTGTAAACAAGGTGAAATTGAGGCTGTTGTTATAGCAACTGGAGTCCACACATTCTTTGGGAAGGCAGCTCACCTTGTGGACAGCACCAATCAAGTTGGACATTTCCAGAAGGTTCTCACAGCAATTGGGAACTTTTGCATTTGTTCTATTGCAGTTGGGCAAGCAAAGATCATGGACTTGAGTAATCTCAGGGAAGATGCAAAGAAGAGGGTGCACTCTATCATTGACAAGTTTGCAGAAAGAGGGCTTCGTTCACTTGCTGTTGCTCGACAGGAAGTTCCTGAGAGAACCAAAGAAAGTCCCGGTGGTCCGTGGCAGTTTGTTGGCTTGCTGCCACTGTTTGATCCCCCAAGGCATGACAGTGCTGAGACCATCCGAAGAGCTCTTAATCTTGGTGTAAATGTCAAAATGATTACTGGTGATCAACTTGCCATAGCTAAGGAGACTGGTAGGAGGCTTGGGATGGGAACAAATATGTATCCATCTGCTTCCTTGCTTGGTCAAGATAAAGATATAAATATGGCTGCCCTTCCTGTTGAAGAGCTGATTGAGAAGGCAGATGGATTTGCCGGAGTTTTTCCTGAGCACAAATATGAAATTGTGAAGAAGTTGCAAGAAAGGAAGCACATTTGTGGAATGACTGGTGACGGTGTCAATGATGCCCCTGCTTTGAAGAAGGCTGATATTGGAATTGCTGTTGCTGATGCTACTGATGCTGCAAGAGGTGCTTCTGACATTGTCTTGACAGAACCTGGATTGAGTGTTATTATCAGTGCTGTTTTAACTAGCAGAGCTATTTTCCAAAGAATGAAAAACTACACAATCTATGCAGTTTCTATCACCATCCGTATAGTGTTTGGCTTCATGTTTATTGCACTGATTTGGAAATTCGACTTCTCTCCTTTCATGGTTTTGATTATTGCCATTCTTAATGATGGAACAATCATGACGATTTCAAAGGACAGAGTGAAGCCATCTCCCATGCCTGATAGCTGGAAACTGAAGGAAATATTTTCCACTGGAATTGCTCTTGGAGGCTACTTGGCATTGATGACTGTGATATTCTTCTGGGCAATGAAAGAAACTACATTCTTCCCTGACAAATTCGGAGTCAGAGACATTAGTGGCAATAATTTTGAAATGACATCAGCTTTGTATCTTCAAGTCAGTATAGTGAGCCAGGCTTTAATCTTTGTGACCCGTTCTCGCAGCTGGTCCTATGTTGAACGCCCTGGATATCTGTTATTAGTTGCATTCGTTATCGCTCAACTGATTGCAACAATAATAGCAGTATATGCAAACTGGGGCTTTGCAAGGGTTCAAGGAATTGGTTGGGGTTGGGCTGGAGTCATCTGGCTCTACAGTGTTGTCTTCTATGTTCCACTTGACTTGATGAAGTTCGCTATCCGTTACATCTTAAGTGGCAAGGCTTGGGTAAATATGCTAGAAAACAAGACTGCCTTCACTACCAAGAAAGACTATGGAAAGGAGGAGAGAGAAGCTCAATGGGCTCTTGCTCAGAGGACCCTCCATGGCCTTCAACCCCCAGAAGCTTCTAGCATTTTCAATGACAAGAACAATTACAGAGAACTGTCTGAGATCGCCGAGCAGGCCAAGAGACGAGCCGAAGTTGCAAGGCTTCGTGAGCTACACACCCTTAAGGGACATGTTGAGTCAGTGGTGAAGCTCAAGGGTTTGGACATTGACACAATCCAGCAACACTACACTGTGTGA 2124 0.4487 MAAGKAAISLEEIKNEAVDLIVFGFLFSRALSLGSVLAFFSTTFPLTPIHQGLLLTLFSCSQVLRDGKWTEEEAAILVPGDIISVKLGDIIPADARLLEGDPLKVDQSALTGESLPVTKNPGDEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAVGQAKIMDLSNLREDAKKRVHSIIDKFAERGLRSLAVARQEVPERTKESPGGPWQFVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSASLLGQDKDINMAALPVEELIEKADGFAGVFPEHKYEIVKKLQERKHICGMTGDGVNDAPALKKADIGIAVADATDAARGASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFMFIALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPMPDSWKLKEIFSTGIALGGYLALMTVIFFWAMKETTFFPDKFGVRDISGNNFEMTSALYLQVSIVSQALIFVTRSRSWSYVERPGYLLLVAFVIAQLIATIIAVYANWGFARVQGIGWGWAGVIWLYSVVFYVPLDLMKFAIRYILSGKAWVNMLENKTAFTTKKDYGKEEREAQWALAQRTLHGLQPPEASSIFNDKNNYRELSEIAEQAKRRAEVARLRELHTLKGHVESVVKLKGLDIDTIQQHYTV 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g0468 707 Gene3D - 656 707 - -
Lele20g0468 707 SUPERFAMILY Calcium ATPase, transduction domain A 62 156 IPR008250 -
Lele20g0468 707 FunFam Plasma membrane ATPase 59 143 - -
Lele20g0468 707 Gene3D - 382 571 - -
Lele20g0468 707 Gene3D - 144 183 - -
Lele20g0468 707 FunFam Membrane H(+)-ATPase1 184 244 - -
Lele20g0468 707 PANTHER CALCIUM-TRANSPORTING ATPASE 188 639 - -
Lele20g0468 707 FunFam Plasma membrane ATPase 237 392 - -
Lele20g0468 707 Pfam haloacid dehalogenase-like hydrolase 236 358 - -
Lele20g0468 707 Gene3D - 62 143 - -
Lele20g0468 707 SUPERFAMILY HAD-like 197 391 IPR036412 -
Lele20g0468 707 SUPERFAMILY Calcium ATPase, transmembrane domain M 156 603 IPR023298 -
Lele20g0468 707 FunFam ATPase 4 plasma membrane-type 329 571 - -
Lele20g0468 707 Gene3D - 186 244 IPR023299 GO:0000166
Lele20g0468 707 PRINTS H+-transporting ATPase (proton pump) signature 201 219 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele20g0468 707 PRINTS H+-transporting ATPase (proton pump) signature 375 400 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele20g0468 707 PRINTS H+-transporting ATPase (proton pump) signature 344 360 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele20g0468 707 PRINTS H+-transporting ATPase (proton pump) signature 516 537 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele20g0468 707 PRINTS H+-transporting ATPase (proton pump) signature 316 332 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele20g0468 707 Gene3D - 245 381 IPR023214 -
Lele20g0468 707 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 319 433 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele20g0468 707 Coils Coil 658 678 - -
Lele20g0468 707 Pfam E1-E2 ATPase 61 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g0468 Lele-ChrLele20 12372977 12379955 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g0468 186 707 Primary Pumps ATPases AT2G24520 82.950 0.0 915