Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g0445 ATGCGGGATAGTGAGAAGAATGTAAATATCAGAGGATCTAGAAAATACAAGAATTCAAATGCACAAACTGAGTTAAAGCCATGCTCATCATTGAAAATCAAAACCAGTAGCCCAAAATCCCAAGTGAAGAAGCATAAATTAAAACCAAAATCTCGTGCACACAGAGTTGGTGCAAATATATCAAGGAAGGCAGTCACTGACTCTTCAAAGGAGGACATAAGCAATGACTTTTCAGATAAAAACTTGATCATTAGAAAAAGTCTTCATAAAACTAATGGAAATCCATCACAGAAGCCCAGCTCATCAAAGCCTCAAGATGAAAAAGTTTCTCTTGGCTTTAAGAAAGAGGGTAAAGATGTTGACGGAGAGGTAAATACTCAGAAGCTTAAAAGGAGAAGGAGAAAAAAGAAAAATCAAAGAAATAATGTGGATCTTGATGATGCTTCACGCCTGCAGAGGAGACTAAGGTATCTTCTGATTAAAATAAAGCGGGAGCAGAACCTCATTGATGCTTATTCTGGAGAAGGTTGGAAAGGTCAGAGGTATGGGAAATTTTCCTTTAGTAATTCCTTTCAAATGTGTTGTTTACTTTTATGGCTGATATTTTCTTTTTATTCAATTGACTATCTCCTTATAGCGACTGTTGTTGCTGATTTTGTTTTTATTAATGGAATTGATTATCGCAGTCAGGAGAAGATCAGGCCAGAAAAGGAGTTGCTAAGAGCTCGGAAGCAGATTTTACAATGTGAGCTTAGTATTCGTGATGCCATTCGCCAGTTGGATACTCTTAGTTCCGTGGGTAGCATTGAGCGCTCTGTCATTGCTCCAGATGGATCTGTTTACCATGAACATATATTCTGTGCAAAGTGCAAGTTGCGTGAAGCTTTCCCAGATAATGATATTATACTATGTGATGGCACCTGTAACCGTGCTTTTCACCAAAAATGTCTTGATCCTCCATTGGACACTGAAAATATTCCTCCTGGAGATCAGGGCTGGTTTTGCAAGTTTTGCGAATGTAAGATGGAAATACTGGAGGCAATAAATGCTCATCTTGGGACTCATTTCTCCCTAGACAGCACTTGGCAGGATGTATTCAAGGAAGAAGCTTCCATACCTGATGGTGATGCTAGTTTACTGAATCCAGAACAAGAATGGCCATCAGATGAATCTGATGATGATGATTATAATCCTGAAAGGAGAGAGGATAGCCACAATATCAGTGCACAGGATATTGATGGCGATGCATCTGATGGTTCAAGCAGTTCTACCAGTCTATGGAATTCAGATGATGGATATTCTCCAGGAATAGGAAAGGATAGCATTGACCATGAATTTTTCTCTGTGAATAATAGCATAGATTCTGACGAATCTGGAGAGATAGCATGTGGCCGGAGGCAGCGAAAAGCAGTTGACTACAAGAAACTCTATGATGAAATGTTTGGGAAAGATGCTCCTGCACTTGAACAAGTCAGTGAAGATGAAGACTGGGGTCCAGGCAGAAGAAAGCGAAGAGAAAAAGAATCTGATGCTGCTAATACTCTGATGACTCTCCATGAAAGTGAGAACAAATGTTCCAACAATGATCAGAATATGGTAAAGGAATTTTCTTCAGACTTCCAAAGTAAAAGGCCTTGTTTCAGGCTTCCACGCCATGCAGTTGAGAAGCTCCGCCAGGCTTTTTCAGAGAATGAACTTCCTCCCAAATCCGTGAAGGATGGTCTTTCGAAGGAGTTGGGACTGGATGCTGATAAGGTTAGCAAATGGTTCAAAAATGCACGTTACTTAGCACTGAAAGCCAGAAAGCAAGCAGAAGGAGTAGAACAGCCTCAGAGCATCACTTCTAGAAACCCAGAAGATTCTAATTTACAAAATCTGGAGATAGAGCATTTGACATCCAAGGAAACCTCAGAAGCAACTTCGACTGACCCCCAGACGAATGCTACAAATGACAGCCACAAAAAGCGCGTAAAGTCATCCTGTGGCAATCCTTTGAAGAAAAGGAAACAAGAGATATCTCCATCTCTGTCAAAAGGAAACGGCAAGAAGGTAGCTTTCTGTGAAATGTCATGTTCTGTACTAATCTGTGACTTGGTTGAGTTCAGTGATGATGTTAGCTTGAAGAAACTGTTGAAAGCAAAACGGAAGAAAGTAACTTATAAATTTGAGGGAGATTCTGAAGCAGCAGACAGAGAATTTGAAAGACTTAGTAAACTGAAGAATAGAATAGACAGGCAGGTTGATCTTTGA 2250 0.4004 MRDSEKNVNIRGSRKYKNSNAQTELKPCSSLKIKTSSPKSQVKKHKLKPKSRAHRVGANISRKAVTDSSKEDISNDFSDKNLIIRKSLHKTNGNPSQKPSSSKPQDEKVSLGFKKEGKDVDGEVNTQKLKRRRRKKKNQRNNVDLDDASRLQRRLRYLLIKIKREQNLIDAYSGEGWKGQRYGKFSFSNSFQMCCLLLWLIFSFYSIDYLLIATVVADFVFINGIDYRSQEKIRPEKELLRARKQILQCELSIRDAIRQLDTLSSVGSIERSVIAPDGSVYHEHIFCAKCKLREAFPDNDIILCDGTCNRAFHQKCLDPPLDTENIPPGDQGWFCKFCECKMEILEAINAHLGTHFSLDSTWQDVFKEEASIPDGDASLLNPEQEWPSDESDDDDYNPERREDSHNISAQDIDGDASDGSSSSTSLWNSDDGYSPGIGKDSIDHEFFSVNNSIDSDESGEIACGRRQRKAVDYKKLYDEMFGKDAPALEQVSEDEDWGPGRRKRREKESDAANTLMTLHESENKCSNNDQNMVKEFSSDFQSKRPCFRLPRHAVEKLRQAFSENELPPKSVKDGLSKELGLDADKVSKWFKNARYLALKARKQAEGVEQPQSITSRNPEDSNLQNLEIEHLTSKETSEATSTDPQTNATNDSHKKRVKSSCGNPLKKRKQEISPSLSKGNGKKVAFCEMSCSVLICDLVEFSDDVSLKKLLKAKRKKVTYKFEGDSEAADREFERLSKLKNRIDRQVDL 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g0445 749 MobiDBLite consensus disorder prediction 410 431 - -
Lele20g0445 749 ProSitePatterns Zinc finger PHD-type signature. 287 338 IPR019786 -
Lele20g0445 749 FunFam pathogenesis-related homeodomain protein-like 278 338 - -
Lele20g0445 749 Gene3D - 542 607 - -
Lele20g0445 749 MobiDBLite consensus disorder prediction 372 434 - -
Lele20g0445 749 SUPERFAMILY Homeodomain-like 542 607 IPR009057 -
Lele20g0445 749 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 17 745 - -
Lele20g0445 749 ProSiteProfiles Zinc finger PHD-type profile. 284 341 IPR019787 -
Lele20g0445 749 Pfam Homeodomain 551 595 IPR001356 GO:0003677
Lele20g0445 749 FunFam pathogenesis-related homeodomain protein 542 606 - -
Lele20g0445 749 MobiDBLite consensus disorder prediction 38 57 - -
Lele20g0445 749 CDD PHD_PRHA_like 286 338 IPR045876 -
Lele20g0445 749 MobiDBLite consensus disorder prediction 607 630 - -
Lele20g0445 749 MobiDBLite consensus disorder prediction 487 510 - -
Lele20g0445 749 MobiDBLite consensus disorder prediction 1 72 - -
Lele20g0445 749 ProSiteProfiles 'Homeobox' domain profile. 540 600 IPR001356 GO:0003677
Lele20g0445 749 MobiDBLite consensus disorder prediction 88 107 - -
Lele20g0445 749 Pfam PHD-finger 286 341 IPR019787 -
Lele20g0445 749 MobiDBLite consensus disorder prediction 13 37 - -
Lele20g0445 749 MobiDBLite consensus disorder prediction 602 680 - -
Lele20g0445 749 CDD homeodomain 543 603 IPR001356 GO:0003677
Lele20g0445 749 SMART HOX_1 542 604 IPR001356 GO:0003677
Lele20g0445 749 SUPERFAMILY FYVE/PHD zinc finger 278 344 IPR011011 -
Lele20g0445 749 MobiDBLite consensus disorder prediction 88 145 - -
Lele20g0445 749 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 278 335 IPR013083 -
Lele20g0445 749 MobiDBLite consensus disorder prediction 108 128 - -
Lele20g0445 749 SMART PHD_3 286 339 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g0445 Lele-ChrLele20 12129567 12139401 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g0445 141 671 Homeobox Transcription Factor Family AT4G29940 48.066 1.20e-144 441
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Lele20g0445 Homeodomain 5.3e-06 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele17g0539 17 17570675 17580766 Lele20g0445 20 12129567 12139401 hybridization
Lele18g0973 18 6389593 6394183 Lele20g0445 20 12129567 12139401 hybridization