Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g0441 ATGGAGAACTACGGTGACAAATTCAAGCATTACTGGGAGACGCAAATGTTCTACCAAACAGAAGAGCTCGACAGAAGCTGGGGACTGGACGAGGCAATCTCCGGCTACTGGAGCTCGCCGGACGGCAACGCTTCATCGTCGACAGCCTCCAAGAACATAGTCTCGGAGAGGAATCGAAGGAAGAAGCTCAACGAACGGCTCTTCGCTCTCAGAGCAGTGGTTCCTAAGATTAGCAAGATGGATAAGGCGTCGATAATAAAGGATGCGATTGAGTACATTCAACACTTACACGAACAAGAGAAGAGCATCGAAGCAGAGATAATGGAGCTTGAATCTGGGAAGAGCATGAACACGGACATGAACATGAACATGCACATGATGATGAACAGCAACAGTGGGAATCAAAATCCGAGCTTTGAATATGAACAAGACCTGCCTGTTCTTCTCAGGTCCAAGAGGAACAAGTCAGATCAGCAGCAGCAGCTTTTTGAGCCCGTCCGCTCAAGAAATTGCCCCATTGATGTCCATGAGCTAAGAGTGACATACAAGGGAGAGAAGACGGTGGTTGTGAGCTTGTCTTGCGGGAAGGGGGCAGACACAATGGTGAAGCTGTGTGAACTGTTTGAATCTTTGAAACTCAAAATTATAACTGCTAACATCACCGCCTTATCTGGCCGCCTCCTCAAGACCGTCTTCATTCAGGCGGACGAAGAAGAGAAAGATGTTGTACAGATAAAGATCCAAGCAGCCATTGCAGCGCTGAATGATCCTGAATGCCCAATGAGCATGTAA 792 0.4773 MENYGDKFKHYWETQMFYQTEELDRSWGLDEAISGYWSSPDGNASSSTASKNIVSERNRRKKLNERLFALRAVVPKISKMDKASIIKDAIEYIQHLHEQEKSIEAEIMELESGKSMNTDMNMNMHMMMNSNSGNQNPSFEYEQDLPVLLRSKRNKSDQQQQLFEPVRSRNCPIDVHELRVTYKGEKTVVVSLSCGKGADTMVKLCELFESLKLKIITANITALSGRLLKTVFIQADEEEKDVVQIKIQAAIAALNDPECPMSM 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g0441 263 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 43 115 - -
Lele20g0441 263 Gene3D - 42 113 IPR036638 GO:0046983
Lele20g0441 263 SMART finulus 53 102 IPR011598 GO:0046983
Lele20g0441 263 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 45 249 - -
Lele20g0441 263 Pfam Helix-loop-helix DNA-binding domain 54 97 IPR011598 GO:0046983
Lele20g0441 263 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 47 96 IPR011598 GO:0046983
Lele20g0441 263 Coils Coil 93 113 - -
Lele20g0441 263 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 46 112 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g0441 Lele-ChrLele20 12094710 12102411 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g0441 1 235 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G29930 46.311 5.86e-67 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele20g0441 HLH 4.5e-12 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele17g0535 17 17526984 17532999 Lele20g0441 20 12094710 12102411 hybridization
Lele18g0977 18 6421041 6426166 Lele20g0441 20 12094710 12102411 hybridization