Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g0434 ATGGGGAACATATTCTTCTTACTCTGTATATGTGAGAATCGGGATTATTTGTTTTCGACAATGAGTTACTCAAACGGTTCACCTCGCCTACAAAACGACATAGAGGCGGGGAATTGTCGCTCCGGCGACTTTGATGAAGGGGAGGGTACGTCCGATCCTTTTGATATTTCCAGTACAAAAAATGCTTCCATTGAACGGCTCAAGCGGTGGAGGCAAGCTGCACTTGTGCTTAATGCCTCTCGTCGGTTCCGATATACCTTGGACCTGAAAAAAGAAGAAGAGAAGCAGCAAACATTGAGGAAGATTAGGGCGCATGCACAAGCCATTAGGGCTGCATATCTTTTCAAAAAAGCTGCTGTGCCACCTGTGAATGGGACTCCAACAGCACCTCCTGCTGCACCTGGTGACTTTCCAATTAGGCAAGAGCAGCTTGCTTCAATTTCAAGGGATCATAACAGTGATGTACTGCAGCAATATGGAGGGGTTAGAGGGCTTGCGGAGTCATTGAAAACCAATTTAGAGAAGGGGGTTCATGGTGATGATGGTGACTTAATGAAGCGTAGAAATGCCTTTGGGTCAAACAATTATCCTCGGAAGAAGCCCAGGAGTTTTTTGATGTTTGTGTGGGACGCTTGCAAGGATCTGACCCTGGTTATATTAATGGTTGCGGCAGTGGCTTCATTGGCACTAGGAATAAAATCTGAGGGTATAAAAGAAGGATGGTATGATGGAGGGAGCATTGCCTTTGCAGTTATTCTTGTCATTGTGGTTACTGCTATAAGTGATTATAAGCAGTCTCTTCAGTTTCGTGATTTAAATGAGGAGAAGAGAAATATACACCTAGAGGTTATAAGAAATGGTAGAAGAGTTGAGATCTCAATCTATGATATTGTTGTTGGTGATGTTATACCTCTGAATATTGGCGATCAGGTCCCTGCTGATGGAATTTTGATAACTGGTCACTCTCTTGCAATTGATGAATCAAGTATGACTGGCGAGAGCAAGATTGTTCACAAGGACTCAAAGAACCCCTTTTTGATGTCTGGATGTAAAGTTGCAGATGGCAGTGGCACTATGCTGGTTACAGGTGTTGGTGTTAATACTGAGTGGGGGCTTTTAATGGCTAGTATATCAGAAGACACTGGTGAAGAAACACCCTTGCAGGTACGCTTAAATGGTGTTGCCACCTTCATTGGTATCGTTGGACTAACTGTGGCTGCTGTTGTTCTGGTTGTGCTACTGGTCAGATATTTTACTGGCCATACTGAAAACTCAGATGGAAGCTCTCAGTTTAGGGCAGGCCATACAAAACTTGGTACTGCGATTAATGGAGCAATTAAGATAGTCACAGTTGCCGTCACCATTGTAGTGGTTGCAGTACCTGAAGGCCTTCCTTTAGCAGTTACCTTAACACTTGCATACTCGATGAGAAAAATGATGGCAGATAAAGCTTTGGTGAGGAGGCTTTCGGCCTGTGAGACAATGGGTTCTGCCACAACCATCTGCAGTGATAAGACAGGAACATTGACTGAGAATAAGATGACTGTGACAGAAGCTTACATTGGGGGGATGAAGACTGATCCTCCTCACAACAAATCTGAGCTCTCTGATATGTACTGCTCTTTGCTTGTTGAAGGTGTTGCACAAAACACCAATGGCAGTGTTTATGTACCTGAGGGTGGTAACAATGTTGAGGTCTCTGGATCACCGACAGAAAAGGCAATTTTGAACTGGGGAATTCAGCTTGGGATGGATTTTGAGGCTGTCAGATCAGAGTCATCAATTATACACGTATTTCCATTCAATTCAGAGAAAAAACGTGGGGGAGTCGCAGTGAGGACGCCTGACTCTCAAGTTCACATACATTGGAAAGGTGCTGCTGAGATTGTACTGGCCTGTTGTACAGCATATTTGGATGCAAAGAACCAGCTTGCAGAGATGGATGAAGAGAAGATGACATATTTTAAAAAAGCTATTGAAGACATGGCTGCTGAGAGTCTTCGCTGTGTTGCCATTGCATATAGATCTTATGAAATAGAGAAAGTTCCAACTAGTGAAGAAGAACTTGATCGCTGGTCATTACCTGAGGATGATCTTGTTTTATTGGCTATTGTTGGTCTGAAGGATCCTTGTCGATCTGGTGTCAAGGATGCAGTGCAACTTTGCCAAAAAGCTGGAGTGAAGGTGCGAATGGTCACCGGGGACAATGTGCAAACTGCGAAAGCAATTGCTCTGGAATGTGGAATACTTGGTTCATCTGCAGATGCCAGGGAGCCAAACATTATTGAAGGCAAAAGATTTCGGGAGTTATCAGACTCACAGAGAGAGGATATTGCAGAAAAGATATCGGTTATGGGGCGGTCTTCTCCTAATGACAAGCTTTTGCTTGTGCAAGCCTTGAGAAAGAAGGGGCATGTTGTTGCTGTAACTGGGGATGGAACTAATGATGCTCCTGCACTGCATGAGGCTGATATAGGTCTTGCAATGGGCATCCAAGGGACAGAAGTTGCCAAGGAGAGCTCTGATATCATCATTTTAGATGACAATTTTGCATCCGTTGTGAAGGTTGTTAGATGGGGACGATCTGTATATGCGAATATCCAGAAATTTATCCAGTTTCAGCTTACAGTAAATGTGGCAGCTCTTGTAATTAACGTTGTTGCGGCAGTTTCTTCTGGCGATGTCCCGCTGAATACAGTGCAGCTTCTCTGGGTAAATCTGATTATGGATACACTTGGAGCACTAGCCTTGGCAACAGAACCACCCACTGATCACCTAATGGATCGATCTCCTGTGGGTCGAAGGGAACCTCTCATAACGAATATCATGTGGAGGAATTTGCTCATACAGGCAATATACCAAATATCTGTTTTGCTCGTACTCAACTTCCAAGGCAGGAGCTTACTGGGTCTAAAGCATGAAGAGTTCACCCATTCTCTCAGAGTGAAGAACACTTTAATATTTAATGCATTTGTTTTCTGTCAAATCTTTAATGAATTCAATGCTCGAAAGCCAGATGAATACAACATCTTCAAGGGGATCACGAAAAACTACCTCTTCATGGGGATAGTGGGAATAACTCTTGTGCTTCAGATTATCATCGTTGAATTTCTGGGAAAATTTACAGAGACAGTCAGGCTAAATTGGAAGATGTGGATCATTTCCGTTGTCATTGGATTCATCAGCTGGCCTCTTGCTGCGGCTGGGAAGTTGATATCTTTACCTGAAACTCCCTTTGCCGAGTATTTTACAAGATGTTTCCGGCGGCGATGA 3273 0.4369 MGNIFFLLCICENRDYLFSTMSYSNGSPRLQNDIEAGNCRSGDFDEGEGTSDPFDISSTKNASIERLKRWRQAALVLNASRRFRYTLDLKKEEEKQQTLRKIRAHAQAIRAAYLFKKAAVPPVNGTPTAPPAAPGDFPIRQEQLASISRDHNSDVLQQYGGVRGLAESLKTNLEKGVHGDDGDLMKRRNAFGSNNYPRKKPRSFLMFVWDACKDLTLVILMVAAVASLALGIKSEGIKEGWYDGGSIAFAVILVIVVTAISDYKQSLQFRDLNEEKRNIHLEVIRNGRRVEISIYDIVVGDVIPLNIGDQVPADGILITGHSLAIDESSMTGESKIVHKDSKNPFLMSGCKVADGSGTMLVTGVGVNTEWGLLMASISEDTGEETPLQVRLNGVATFIGIVGLTVAAVVLVVLLVRYFTGHTENSDGSSQFRAGHTKLGTAINGAIKIVTVAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTENKMTVTEAYIGGMKTDPPHNKSELSDMYCSLLVEGVAQNTNGSVYVPEGGNNVEVSGSPTEKAILNWGIQLGMDFEAVRSESSIIHVFPFNSEKKRGGVAVRTPDSQVHIHWKGAAEIVLACCTAYLDAKNQLAEMDEEKMTYFKKAIEDMAAESLRCVAIAYRSYEIEKVPTSEEELDRWSLPEDDLVLLAIVGLKDPCRSGVKDAVQLCQKAGVKVRMVTGDNVQTAKAIALECGILGSSADAREPNIIEGKRFRELSDSQREDIAEKISVMGRSSPNDKLLLVQALRKKGHVVAVTGDGTNDAPALHEADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINVVAAVSSGDVPLNTVQLLWVNLIMDTLGALALATEPPTDHLMDRSPVGRREPLITNIMWRNLLIQAIYQISVLLVLNFQGRSLLGLKHEEFTHSLRVKNTLIFNAFVFCQIFNEFNARKPDEYNIFKGITKNYLFMGIVGITLVLQIIIVEFLGKFTETVRLNWKMWIISVVIGFISWPLAAAGKLISLPETPFAEYFTRCFRRR 1090
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g0434 1090 Gene3D - 62 117 - -
Lele20g0434 1090 FunFam Calcium-transporting ATPase 62 118 - -
Lele20g0434 1090 ProSitePatterns E1-E2 ATPases phosphorylation site. 504 510 IPR018303 -
Lele20g0434 1090 SUPERFAMILY HAD-like 500 915 IPR036412 -
Lele20g0434 1090 Gene3D - 512 710 IPR023299 GO:0000166
Lele20g0434 1090 CDD P-type_ATPase_Ca_PMCA-like 186 943 - -
Lele20g0434 1090 PRINTS Sodium/potassium-transporting ATPase signature 245 265 - -
Lele20g0434 1090 PRINTS Sodium/potassium-transporting ATPase signature 621 639 - -
Lele20g0434 1090 PRINTS Sodium/potassium-transporting ATPase signature 495 516 - -
Lele20g0434 1090 PRINTS Sodium/potassium-transporting ATPase signature 882 903 - -
Lele20g0434 1090 FunFam Calcium-transporting ATPase 9 plasma membrane-type 356 526 - -
Lele20g0434 1090 Pfam Ca2+-ATPase N terminal autoinhibitory domain 52 94 IPR024750 GO:0005516
Lele20g0434 1090 PRINTS P-type cation-transporting ATPase superfamily signature 725 735 - -
Lele20g0434 1090 PRINTS P-type cation-transporting ATPase superfamily signature 703 714 - -
Lele20g0434 1090 PRINTS P-type cation-transporting ATPase superfamily signature 502 516 - -
Lele20g0434 1090 PRINTS P-type cation-transporting ATPase superfamily signature 834 846 - -
Lele20g0434 1090 PRINTS P-type cation-transporting ATPase superfamily signature 326 340 - -
Lele20g0434 1090 PRINTS P-type cation-transporting ATPase superfamily signature 810 829 - -
Lele20g0434 1090 Pfam E1-E2 ATPase 280 480 - -
Lele20g0434 1090 Gene3D - 210 1066 - -
Lele20g0434 1090 SFLD Haloacid Dehalogenase 484 862 - -
Lele20g0434 1090 Pfam haloacid dehalogenase-like hydrolase 499 824 - -
Lele20g0434 1090 Gene3D - 185 378 - -
Lele20g0434 1090 SUPERFAMILY Calcium ATPase, transduction domain A 280 375 IPR008250 -
Lele20g0434 1090 FunFam Calcium-transporting ATPase 257 378 - -
Lele20g0434 1090 SUPERFAMILY Calcium ATPase, transmembrane domain M 159 1072 IPR023298 -
Lele20g0434 1090 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 509 707 IPR023299 GO:0000166
Lele20g0434 1090 Pfam Cation transporting ATPase, C-terminus 895 1072 IPR006068 -
Lele20g0434 1090 PANTHER CATION TRANSPORTING ATPASE 103 1073 - -
Lele20g0434 1090 FunFam Calcium-transporting ATPase 827 1076 - -
Lele20g0434 1090 SFLD p-type atpase 484 862 IPR044492 -
Lele20g0434 1090 FunFam Calcium-transporting ATPase 704 855 - -
Lele20g0434 1090 FunFam Calcium-transporting ATPase 210 267 - -
Lele20g0434 1090 Gene3D - 499 855 IPR023214 -
Lele20g0434 1090 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 152 1072 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Lele20g0434 1090 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 777 890 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele20g0434 1090 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 247 416 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele20g0434 1090 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 442 528 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele20g0434 1090 FunFam Calcium-transporting ATPase 512 710 - -
Lele20g0434 1090 Pfam Cation transporter/ATPase, N-terminus 160 227 IPR004014 -
Lele20g0434 1090 SMART Cation_ATPase_N_a_2 158 232 IPR004014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g0434 Lele-ChrLele20 11985375 11999230 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g0434 25 1083 Primary Pumps ATPases AT4G29900 73.610 0.0 1592