Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g0427 ATGGCGGGTTCTCCTAATGATCTTCGGCAATTCTTTTGCTCTAATGAAAACTCTATTGTGTGGGCTGCTCGTTCTAGTAGAATTTGTCCTCAATGTAATGGGGACATAACGCCTTCCCAAATAAAAAGTGAGGGAATCGAATCTGTGCAGAAGTATCAGGCATTTCATGCTTCTGAGAAGCCGGCTCCCAAGTCAGACATCGCCAAGATGGAAGAACTTGAAATTACTGAGAATTTATTGGACAAACAACCAAAGTGTCCAGTGTGCCAATATGAGTTCGAGGTGGGAGTCATGGCAAAAGCCATGGCTTGTGGTCATCTCTACCATCTAAATTGCGCTGTTAATTGGCTCCAAGAACATAAAAACAAATGTGCTCTCTGTAAAGCCAGGTTACCCCATGACCAAAAAGTTAGTTACAAGAAGCCTGGTGGTGATGGTTCTTCCTCTAGTTCTTCATATGCTTAA 465 0.428 MAGSPNDLRQFFCSNENSIVWAARSSRICPQCNGDITPSQIKSEGIESVQKYQAFHASEKPAPKSDIAKMEELEITENLLDKQPKCPVCQYEFEVGVMAKAMACGHLYHLNCAVNWLQEHKNKCALCKARLPHDQKVSYKKPGGDGSSSSSSYA 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g0427 154 Pfam Ring finger domain 85 128 IPR001841 -
Lele20g0427 154 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 47 134 IPR013083 -
Lele20g0427 154 ProSiteProfiles Zinc finger RING-type profile. 86 128 IPR001841 -
Lele20g0427 154 SMART ring_2 86 127 IPR001841 -
Lele20g0427 154 SUPERFAMILY RING/U-box 72 134 - -
Lele20g0427 154 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 48 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g0427 Lele-ChrLele20 11936825 11937289 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g0427 61 128 C3H Transcription Factor Family AT1G68180 42.647 5.10e-12 59.7