Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g0420 ATGGAAGATGATGGGACGATATGCAACACAAGGCTGAGTCTAGGGCTTGGATTAGGAGGTTATGTGATGCCATTAAAGAAGCAGAAATTTGAACAAGAAGCCATTGTTCATAATAATCATCATCAGAAAGAATTGATCGGTTTGAAGACCAGATCAATCGATGATGATGAAGAAGATGAAAAGAGCGATCATAGCAGGAATAGTTTCAGAAAGAAATTGAGACTCACCAAGGACCAGTCCTCCATGCTTGAAGATAGCTTTAAGCTCCATAGCTCTCTCAACCCATTCCAGAAACAAGAACTTGCTCAGCGATTGAATTTGAAGCCCAGACAGATCGAAGTTTGGTTTCAAAACAGAAGAGCAAGGAAAAAGTTGAAGCAAACGGAGGTAGACTGTGAGTTACTGAGAAAATGCTGCGAAAACCTAAGAAACGAGAACAGAAGGTTGAAGAAAGAAGTAGAAGAACTACGTGCTCTGAAAGTGGAAGCATCGTCGTCGTCTTCGTCACCACCACCATTAATATTAGCAGGAAGCAGTAACATTAATAACAGTATTCAACTACTCTAG 567 0.4056 MEDDGTICNTRLSLGLGLGGYVMPLKKQKFEQEAIVHNNHHQKELIGLKTRSIDDDEEDEKSDHSRNSFRKKLRLTKDQSSMLEDSFKLHSSLNPFQKQELAQRLNLKPRQIEVWFQNRRARKKLKQTEVDCELLRKCCENLRNENRRLKKEVEELRALKVEASSSSSSPPPLILAGSSNINNSIQLL 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g0420 188 Coils Coil 125 166 - -
Lele20g0420 188 Pfam Homeodomain 70 124 IPR001356 GO:0003677
Lele20g0420 188 SMART HOX_1 68 130 IPR001356 GO:0003677
Lele20g0420 188 ProSiteProfiles 'Homeobox' domain profile. 66 126 IPR001356 GO:0003677
Lele20g0420 188 CDD homeodomain 70 127 IPR001356 GO:0003677
Lele20g0420 188 ProSitePatterns 'Homeobox' domain signature. 101 124 IPR017970 GO:0000981|GO:0006355
Lele20g0420 188 Gene3D - 75 122 - -
Lele20g0420 188 Pfam Homeobox associated leucine zipper 126 159 IPR003106 GO:0006355|GO:0043565
Lele20g0420 188 SMART halz 126 169 IPR003106 GO:0006355|GO:0043565
Lele20g0420 188 SUPERFAMILY Homeodomain-like 60 127 IPR009057 -
Lele20g0420 188 MobiDBLite consensus disorder prediction 47 71 - -
Lele20g0420 188 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 47 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g0420 Lele-ChrLele20 11894276 11895429 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g0420 53 161 Homeobox Transcription Factor Family AT4G37790 67.890 8.11e-47 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lele20g0420 Homeodomain 5e-16 CL0123