Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g0412 ATGCCTAATATTATAGATCTTAATATTGTTGAAGATCAAAGCCATGAGCAAATTTTTAGAACCCACCATAACCAACCTTCTTCTTCTTCTTCCTCTTCTCTATCATCATGCCCTATTCTCTTTAACCCCTCTCATCATCAGCAGGATCACGCTCATGGATCTTCCTTCTGGGGCTCCAAGAACTTACAAAATCATGATTATGACAAGGCGGGTGGTAAGAATATTATTGGTTCAAGTGGTGGATCATGGAATGATCCAGAAGAAAAGGGTGGTGGTGTTGTTGAGATCAGAAAGAGAAGCCTGAAACTGAAAGTTTGGAAGAGATCATCAGCATCAGGATCAGAGAGGGATCATCAGGATGATGAAAATCATCAAACTGATCAGGATAATGATGATTCAGTGAAGTGGATGCCTTCAAAGATGAGAATGATGAGGAAGATGATGGCTTCAGATCATAATAATAAACCTTCTTCCTCTTCTTCTTCTGATATCAATATACCCTCTTGGCAGATTATTAACTCTGAAGATCAGAATCAGAATCATAATCAAGAAAGAGCATTATTATTGTCTCCTCGAGGAACTGATAATAATGGTAGCAGCAGCAACAATTCTTCAACCCACAGTAACAGTAATATCACTGTTAGGGTTTGTGCTGATTGCCACACCACCAAGACCCCTCTCTGGAGAAGTGGACCAAGAGGTCCTAAGTCACTATGCAACGCTTGTGGGATTCGACAAAGGAAAGCAAGGCGAGCTATGGCGGCGGTTGCTGCTGCAAATGGGTCACCGCCGGATCAGCAGGTAGCTGATAAATATTCTGCAGTGAAAGGGACTTACAAGGTTCACAGCAGAAAAGAGAAGAAGTTGAAATTGGAGTATGAGAGGACTCATCATCAGATGAAGAAGAAGCACAAGCTTGAAGATCATTATCATCATCAAGCAAAGGCAACAGCTAATAATAACAATAATTCAAGAGGGAGATCACCATCATCATCATCAATATTAAACAAGTTTAGTTTTGAGGATTTCACAGTAAGCTTGATGAGTAAGAACTTGGCAGCTTCATCACAAGTTTTCCCTCAGGATGAGAAGGAAGCTGCAATTCTTCTTATGGCTTTATCTTGCAATGGCCTTGTTCATGGATGA 1146 0.4066 MPNIIDLNIVEDQSHEQIFRTHHNQPSSSSSSSLSSCPILFNPSHHQQDHAHGSSFWGSKNLQNHDYDKAGGKNIIGSSGGSWNDPEEKGGGVVEIRKRSLKLKVWKRSSASGSERDHQDDENHQTDQDNDDSVKWMPSKMRMMRKMMASDHNNKPSSSSSSDINIPSWQIINSEDQNQNHNQERALLLSPRGTDNNGSSSNNSSTHSNSNITVRVCADCHTTKTPLWRSGPRGPKSLCNACGIRQRKARRAMAAVAAANGSPPDQQVADKYSAVKGTYKVHSRKEKKLKLEYERTHHQMKKKHKLEDHYHHQAKATANNNNNSRGRSPSSSSILNKFSFEDFTVSLMSKNLAASSQVFPQDEKEAAILLMALSCNGLVHG 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g0412 381 FunFam GATA transcription factor 21 211 310 - -
Lele20g0412 381 MobiDBLite consensus disorder prediction 189 210 - -
Lele20g0412 381 MobiDBLite consensus disorder prediction 109 135 - -
Lele20g0412 381 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 213 250 - -
Lele20g0412 381 ProSiteProfiles GATA-type zinc finger domain profile. 215 247 IPR000679 GO:0006355|GO:0043565
Lele20g0412 381 MobiDBLite consensus disorder prediction 19 91 - -
Lele20g0412 381 MobiDBLite consensus disorder prediction 104 135 - -
Lele20g0412 381 SMART GATA_3 211 262 IPR000679 GO:0006355|GO:0043565
Lele20g0412 381 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 13 380 - -
Lele20g0412 381 Gene3D - 215 253 IPR013088 GO:0006355|GO:0008270
Lele20g0412 381 MobiDBLite consensus disorder prediction 20 62 - -
Lele20g0412 381 ProSitePatterns GATA-type zinc finger domain. 217 242 IPR000679 GO:0006355|GO:0043565
Lele20g0412 381 CDD ZnF_GATA 216 244 IPR000679 GO:0006355|GO:0043565
Lele20g0412 381 Pfam GATA zinc finger 217 250 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g0412 Lele-ChrLele20 11837737 11839232 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g0412 93 381 C2C2-Gata Transcription Factor Family AT4G26150 35.314 9.86e-32 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lele20g0412 GATA 5.2e-17 CL0167