Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g0402 ATGGACACTGTCTTCTCCCTCCCCGAGCCTGCCAGAGCTCATTTTCTGCAGTCTACACTGCAGTCCTCTGGCTGCTCTTACATTTGTCTTTGGTCCTATGATTCCCTCTTATCCAAGTTTGTACTTACGTTAACCTGGTTTGATTTTTCTGAGCAGTCGTTTGCTGTGTTTGGATGGATTGTTGAATGACTGGCTTTCAAGAACCGCAGCTACCTTGAGCTGCAGCAACCAGATCTTCTAAGACTGGCATGGACACAAGTACAGACACAGTTTTATCAGGAAGCAAGGATTAAGACTGCTGTCTTCATGGGCTGCAATAATGGAGAAATGGAACTTGGCTTCCCAAACATGTCTCAAGATGATATTCATAGAGAACTGAGGAATTGGTTCCCAGATGAATTTTCCAGATTACAGTCATCATCATCTCAGCAGGCAAACATTATTGATCAGAGTCATAAGAACCCACCTTCATCATCTTCATCTTCATTAAGATCACTCTCACTATCTGCTGGAAGCCCTGAATACTCATCCCTTCTGTTCAATATTAATCCTCCAGCTGGATCTTCTCCTCATTTTCCTCCTCCTCCTCAAGATCAATCCCTCACAACAGCTCCTTCTTCTAGCCCTATACACCAGCAAGTAGTCATCCAAGCTCTAGCACAAGCCACAGCTCAGAGTCCATTTCATTCACCAGAGACTGAAAATGATGCCATCATGAGAGCAATCCTTCATGTCCTTTCTTCTACTAATTCATCATTACCTTCTTCTTCAACCTCCCTTCATCATCATCAACAGAAATTGCAGCCTAATTATATGGTTCAACCTGAGACCAGTGCCTTCAAGAGTTACAACCCCATTCTTATGCCACCGCCATCTTCCCAAATGGGACCTGCAGATCAATTGCGCAGGCAAAGTTTGTTTAAGAGGTCATTGACGTTTTTTAGAGGCTTGAATAATTTCATGAGAATGAGAGAACGTATTCAAACAACTCGCCCCAGCACTACACAGCTTCATCACATGATTTCAGAAAGAAGAAGGCGTGAAAAGCTGAACGAGAATTTTCAGTCTCTTAGATCACTCCTTCCTCCAGCAACCAAGAAAGACAAAGCTTCGATACTTACAACAGCAAAGGAAGTACTGAGCTCGTTAATGGAGGAGATAGAAAAGCTTAGAGAGAGAAACAAGCAGCTGGAGGCAGCAACAACGTCGTCATCAATGGCGGCGGCTGCTCCACCAGCTGTCAAAGAAGCAAGAAGTGATGATCACGAAATCGAAAATGAAAGGTTAAATGTGAGCATTTCAGGTGAATTACCATCAGAATCAAGCGCATCGGAAGAGAGAATGGTGGATTTGGAAGTGACGGTGAGGGGACAAAGTTCTCAAGTCGATATTCTGATTCGATTACTGGGATTTCTTAAACAGGATCAATATCTGAGCTTGATTTCCATGGAAGCTAACACGCATTTAGCTCACGCCACGATCTTCAATCGAATCACCATAAGACTGAGGGTTGAGGGGAGTGAATGGGACGAATCTGCCTTCCAGGAAGCAGTGAGAAGAGTGGTTGCTGACCTAGCACATTGA 1584 0.4394 MDTVFSLPEPARAHFLQSTLQSSGCSYICLWSYDSLLSKFVLTLTWFDFSEQSFAVFGWIVEXLAFKNRSYLELQQPDLLRLAWTQVQTQFYQEARIKTAVFMGCNNGEMELGFPNMSQDDIHRELRNWFPDEFSRLQSSSSQQANIIDQSHKNPPSSSSSSLRSLSLSAGSPEYSSLLFNINPPAGSSPHFPPPPQDQSLTTAPSSSPIHQQVVIQALAQATAQSPFHSPETENDAIMRAILHVLSSTNSSLPSSSTSLHHHQQKLQPNYMVQPETSAFKSYNPILMPPPSSQMGPADQLRRQSLFKRSLTFFRGLNNFMRMRERIQTTRPSTTQLHHMISERRRREKLNENFQSLRSLLPPATKKDKASILTTAKEVLSSLMEEIEKLRERNKQLEAATTSSSMAAAAPPAVKEARSDDHEIENERLNVSISGELPSESSASEERMVDLEVTVRGQSSQVDILIRLLGFLKQDQYLSLISMEANTHLAHATIFNRITIRLRVEGSEWDESAFQEAVRRVVADLAH 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g0402 527 MobiDBLite consensus disorder prediction 141 166 - -
Lele20g0402 527 Coils Coil 373 400 - -
Lele20g0402 527 SMART finulus 340 389 IPR011598 GO:0046983
Lele20g0402 527 Pfam Helix-loop-helix DNA-binding domain 338 383 IPR011598 GO:0046983
Lele20g0402 527 Gene3D - 333 407 IPR036638 GO:0046983
Lele20g0402 527 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 334 383 IPR011598 GO:0046983
Lele20g0402 527 MobiDBLite consensus disorder prediction 179 213 - -
Lele20g0402 527 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 85 524 IPR044658 -
Lele20g0402 527 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 335 403 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g0402 Lele-ChrLele20 11742571 11747495 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g0402 1 527 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 37.607 6.94e-85 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele20g0402 HLH 1.2e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele18g1019 18 6801978 6807012 Lele20g0402 20 11742571 11747495 hybridization