Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g0399 ATGGTGGAAGCTCAGTTGGAGACTTCAAAACCTTCTGAAGTTTTAATGGCTTTTCCACATTACCGTCGATCACATTTGAAGAGTGGAACTTTTCATACCCTGATTCGTATCCTATCTCACTGCAGCAATGAGTGTAGTCTAGCTGGCACCAGTGGAAACCATGCTGCTTCTCAAGAGCTAAAAAACCATGACAATGTCATCTATAGATTTCGGCAAGAAAGCCAGGAAAAAGAGCATGAGGACTTGCAAATTTCTGGTACTGATCTTATGAATCTCAAGCATCCTGTATCCCATAAGGAAAAACAGGCTCATGAGAGCTCCGATGGTAGGGAGTTTATGATGGGAGTAGAGAAAGATGTAGGCTCTACTGGAAGGCAGGATATGATGATTTGTGGAAGAGAAAGTGTTGAGGCCTTGTCCATGGGAACTAATGGTTTGAATAAGGAACAGAAGATAATAGACGAGTTAAATCAGATAGTGAAAGGAACTGAAAGCCTTGTTGACAATGGCTCAATTCCTTTGAACTTGGGCTCAGGTGAAAACCAGAATGGAAGCAGTGAAGTTGACTTGATGGATTACCAAGTAGAGCATATTGAATTTAGAGGATCCGATATCAGCACATCTGGAACTGAAAGTGAGTTATATAAAGAAGGAGAATTTAATCACAATATACCCGAAGGCTTTGATGCATCTTTAATTGCTAAAGAAGGAGAGTTTGAGAAGGAAGAACATGGTCAAAAGTTTCAGGCAGCAACACAGCTTTCTCTAGATGACCTTATGAAATATAGCGAACCGTTCAATTTGAGTATTGAGCTTGAGAGACTGCAAAAGGAAATGATGGAATTGGTGAAACCTGTTTCTGCTGCAGTTGTTTCTCTTCCTACTACTGAAGAGGGTAAGTCTGAGAAGGAAGAACAACATAGTCAAAAGGTATGTGAGGCTATGCAATTTTCTGGAGATCAGGGTGCAAATAATGAAGAATCAAATTCAAGTGTAAAGCATGAGAAACAAAAAAGGGAAATACACTCAGCAAAACCAGCTTGTGCTGCAATGGTTTCTCTTCCAAATACCAAAGAGGGTGAGTTTGAGAAGGAAGAACAACATGATCAAAAGGCTTCTGAAGCAATGCGCATTTCTGTAGATCAGGCTATGAATAGTGAAGCATCGATTTCAAGTATAAGGTCCAGTAGACAAGAAAAGGAAAAGGAATTGGTGAAACCTGTCTCTACTGCAATCATTTCTCTTCCTACTACTGAAGAGGGTGAGTTTAAGAAGGAAGAAAAACAGGGGCAAAGGGGTCCTGAAGCAATGCAATTTTCAATAGATCAGGATATGAATAATGAAGCATCAAATTCACATATAAAGAATGAGAAACAACAAAAGGAAATGGAGCCAGTTTGTGCTGCAATCGTTTCTCTTCCTACTACCAGAGAGGGTGAGTTTGAGAAGGAAGAACAACATGGTCAAAAGGTTCCTGAAGCAATGGACATTTCTGTAGATCAGGGTATGGATAGTGAAGCATTGATTTTAAAAAGAAAGCCTGAAAGACAACAAAATGAAATGGAATTGGCGAAACCTGCCTGTGCTGAAATTGTTTCTCTTCCTGGTATTGAAGAGGATGAACTTGAGAAGGAAGAACATAATGGTAGTGATGGTTCCAAACCCACTAAGACGTATACAAGAAAGAGTAAGAAGAGGGATTTGGACCACTCGGGCTTGGACCCATCAGGTAGAAAGGTCCCTGTAGCAATGCACTTATCTGTAAATCAGGGTATAAATGGTGAAAAATTGAATTTGAGCGAATATAGTGAAGAGATGTCATTCATGGACATTGATATTTTGGATGCTAAACATAGAATGCAGCATGAAGAAGAGCAGCCAGAAAAAATAAATTGCTCAAATGATGTAACATTTTCCAATCATCCGGATAAGGAAGACACGGAAGAGGGAGAAATTTCAGGTGACTTTAGCGTGGACGAGAATTCAATTGATGCATCTTCTGCAGATTCTTTGATGATAGAACATAGGAAACGTGATGTAGAAAAGCCCAAACATGTTATTGAAAATACAGTATTTCCTTTTAATATACAGAAAGAAGAAAAAGAAAAAAAATATGAATCATCTCAAGATGCCTGTAATAGTGGACTAATGGAGCCTAGGAAAAGTGATAAAAATGAGTTTCCAAATGGAGTTGACTTTGGAATCTCTCGGGAAATTATTGATTATGGAGATTTAGTGGAACATGATTCAGTATTGGTGACTGGAAAAAGTCAAGGCAGTGGAATTAAAGGGGTTGTTGGAATGCCACCAACTTTGGCTAACAAAAAAGTCTTACCCAAAGTCGTCTTGGAAGAAGAAGCCACTGAAGATCATCAAAACGCATCTGCAGTGAAGTGCATTGTGCTGGATTTGCTTTTGTTGTTTGGTTGTATGACCACTGTGGCTGATCATTTGCAACAGAAAGCTGGCATCAGTTGTAAGAAAAAGCGTGGTCCTGTTACTGAGGAAAAGAAGGCCAAAAAGAAGGAAAAGAAAAGAAAGCAGCGGGCAGAAAAGAATAGAAAACTTGGTGTTAAAAGGTTGAAGTTGCAGCCAGTACAGAAACCAAAACGCATCACATATTGCCGTCATTATCTGAAGGGAAGGTGCCATGAGCCATGCTGTCATTTTGCTCGTCACTCTTGCATGAAAGGTGATGATTGTCCATTTGATCATGAGCTCTCCAAGTATCCTTGTAGCAATTTTGTGACTAAAGGTTCTTGCAGCAGAGGGAATGCTTGTATGTTTTCACACCAGATGCCAACCAAGCAAGATGTTGCTACATCTTCAAATGATAGCAAAGCTGAGTTGAAGCCTATACCATTAGGAAATACAAAATTGAGTAAGCCACCTAACATCAGTAGCAGCAGTGCTTCTCAGCAAACACAGATCTCTGATTCAAAAGGAATTCAATGTCAATTCAATTCAGGAAAAGAAGGGGCAGACACTGTAAAGAAACCACCGACAATGGCACCTAAAGGAATTAGTTTCCTCAATGTTTCAAAACCATCATCTCCTAAACAAGTGTTGGTAACTCCAAACAAGGAAAGTTCTGTTCAAATTGGGACCCTTGCTGACCAAAGTGCCTCTGGCACAGCTTTAAACTCGATGAATCCTGAGAAAACGCCAGTAATGGCACCTAAAGGAATTAACTTCCTTTCATTTGGAAAAGGACGCGTCTCCAGTTTCAAAAGTACTGTGTGCTCCTTTTTCAATAAGGAATATGGTATCAAGTTGTCTCACAAAGAAAGTTTGGGTACGCCGGAACAAGCATCTCCAGAGGAGGAGGATTGCAGTAAAGTCAACAGTGGGACAAAACAAAGTGTACTGCAAAATCAATATATAGGAGAGAAAATGGATTTGGGTTTTCGAGGAAAAGCTTTTACAGATAATTATAGGAATGATGTACAATTTAGCTCAACCTCTGGTGAGGATCAGAGTCTTAGTAGATCAGTGCAAGAGGGAGTAAAGGCATATAATTCTCAGACTTCAACTCTGACCTCGTTGTCTATGCTTCCGACTTCTCCATTTGTTTCAGGTCAATCTTCAGAAGGCCTAGCATCTGGACATCATAAGCTCGTATTTAACTCAGCCCAAAGGGCACTGTTATCAACTCTATCATTTGCAGCAGAGCACGAGTCCAATGTTAAGCTAAAGTCCCTTGTCGGTGCATCAGCTGTGAAATTAGAGATGAACAAGAATCATGGCAGCTTGCAGATCCTTATGGGGACAGATTTGATAAGCAATTCCCCACACTCTTCAGAACAAGTGATGAATGCAAATAGATGGCGTTTTAGTTTTACCCCCAGAAATCACCCGCTGTCTGCCAAAAATGCGGATTCTGAATGTGGTGATATTGAAGGCATCGAGGAAGAAGAAACGGCAAAATGCAGTGGGCAGAAGAATTTGTGGGGTGGAGGAGTTAAGGGAGAAGAGCCCAAGTCCCATCAACAGAAACGACAGAGACAAAGAGGAATGGAGTGA 4023 0.4037 MVEAQLETSKPSEVLMAFPHYRRSHLKSGTFHTLIRILSHCSNECSLAGTSGNHAASQELKNHDNVIYRFRQESQEKEHEDLQISGTDLMNLKHPVSHKEKQAHESSDGREFMMGVEKDVGSTGRQDMMICGRESVEALSMGTNGLNKEQKIIDELNQIVKGTESLVDNGSIPLNLGSGENQNGSSEVDLMDYQVEHIEFRGSDISTSGTESELYKEGEFNHNIPEGFDASLIAKEGEFEKEEHGQKFQAATQLSLDDLMKYSEPFNLSIELERLQKEMMELVKPVSAAVVSLPTTEEGKSEKEEQHSQKVCEAMQFSGDQGANNEESNSSVKHEKQKREIHSAKPACAAMVSLPNTKEGEFEKEEQHDQKASEAMRISVDQAMNSEASISSIRSSRQEKEKELVKPVSTAIISLPTTEEGEFKKEEKQGQRGPEAMQFSIDQDMNNEASNSHIKNEKQQKEMEPVCAAIVSLPTTREGEFEKEEQHGQKVPEAMDISVDQGMDSEALILKRKPERQQNEMELAKPACAEIVSLPGIEEDELEKEEHNGSDGSKPTKTYTRKSKKRDLDHSGLDPSGRKVPVAMHLSVNQGINGEKLNLSEYSEEMSFMDIDILDAKHRMQHEEEQPEKINCSNDVTFSNHPDKEDTEEGEISGDFSVDENSIDASSADSLMIEHRKRDVEKPKHVIENTVFPFNIQKEEKEKKYESSQDACNSGLMEPRKSDKNEFPNGVDFGISREIIDYGDLVEHDSVLVTGKSQGSGIKGVVGMPPTLANKKVLPKVVLEEEATEDHQNASAVKCIVLDLLLLFGCMTTVADHLQQKAGISCKKKRGPVTEEKKAKKKEKKRKQRAEKNRKLGVKRLKLQPVQKPKRITYCRHYLKGRCHEPCCHFARHSCMKGDDCPFDHELSKYPCSNFVTKGSCSRGNACMFSHQMPTKQDVATSSNDSKAELKPIPLGNTKLSKPPNISSSSASQQTQISDSKGIQCQFNSGKEGADTVKKPPTMAPKGISFLNVSKPSSPKQVLVTPNKESSVQIGTLADQSASGTALNSMNPEKTPVMAPKGINFLSFGKGRVSSFKSTVCSFFNKEYGIKLSHKESLGTPEQASPEEEDCSKVNSGTKQSVLQNQYIGEKMDLGFRGKAFTDNYRNDVQFSSTSGEDQSLSRSVQEGVKAYNSQTSTLTSLSMLPTSPFVSGQSSEGLASGHHKLVFNSAQRALLSTLSFAAEHESNVKLKSLVGASAVKLEMNKNHGSLQILMGTDLISNSPHSSEQVMNANRWRFSFTPRNHPLSAKNADSECGDIEGIEEEETAKCSGQKNLWGGGVKGEEPKSHQQKRQRQRGME 1340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g0399 1340 MobiDBLite consensus disorder prediction 840 856 - -
Lele20g0399 1340 MobiDBLite consensus disorder prediction 1325 1340 - -
Lele20g0399 1340 MobiDBLite consensus disorder prediction 1095 1117 - -
Lele20g0399 1340 MobiDBLite consensus disorder prediction 541 581 - -
Lele20g0399 1340 MobiDBLite consensus disorder prediction 624 661 - -
Lele20g0399 1340 MobiDBLite consensus disorder prediction 385 405 - -
Lele20g0399 1340 MobiDBLite consensus disorder prediction 319 345 - -
Lele20g0399 1340 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEI 476 1246 IPR045124 GO:0003723|GO:0045892
Lele20g0399 1340 MobiDBLite consensus disorder prediction 1306 1340 - -
Lele20g0399 1340 SUPERFAMILY CCCH zinc finger 910 936 IPR036855 GO:0046872
Lele20g0399 1340 MobiDBLite consensus disorder prediction 329 343 - -
Lele20g0399 1340 ProSiteProfiles Zinc finger C3H1-type profile. 881 905 IPR000571 GO:0046872
Lele20g0399 1340 MobiDBLite consensus disorder prediction 960 980 - -
Lele20g0399 1340 Coils Coil 833 853 - -
Lele20g0399 1340 MobiDBLite consensus disorder prediction 833 856 - -
Lele20g0399 1340 MobiDBLite consensus disorder prediction 937 980 - -
Lele20g0399 1340 SMART c3hfinal6 909 933 IPR000571 GO:0046872
Lele20g0399 1340 SMART c3hfinal6 882 907 IPR000571 GO:0046872
Lele20g0399 1340 Gene3D - 884 946 - -
Lele20g0399 1340 ProSiteProfiles Zinc finger C3H1-type profile. 906 934 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g0399 Lele-ChrLele20 11718477 11726539 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele20g0399 None None None