Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g0398 ATGGTGGTTGCTCACGGTGGATCCGGCGGAATCGGCCATGGTGGAAGGTCAGAATCCATTTCTACAGTTCTATTGAACGAAGCTATGGCTGGAGTAGCACGAGTCAAATCAGAGCAAGAAATGGTGTCCGATGAGGACACCTGTCGTTCGAGTTCTGGTGGTTACTGCGATGTTGAAGGTGAACCACACGACGGCGTTTCCAGTGAGGATTCGGGAAGGAAGAGCTCTCAAGTGACGGATGAGGAGTTTAAACCGGTTCACGTCAAGCTTGAGGCACCGGGTGGAACGGTGGATGACGATGGCGGTGCTGGAGCTAATGGGTCGTGTTATTCATCGCCAATCTTCTTGCCGCAACCGATGGAAGGGCTGCACGAGGTGGGCCCGCCTCCGTTTCTGAAGAAGACCTTCGAGATGGTTGAGGACCCGGTGACCGACCCGATTGTGTCCTGGAGCGAAGCTCGTGATAGCTTCATCGTTTGGGATTCCCACGAATTTTCCAGAATTCTTCTCCCTAAGTACTTCAAACACAGCAATTTCTCGAGCTTCATTCGCCAGCTTAATACATACGGATTTCGGAAGATTGATTCAGACCGTTGGGAGTTTGCGAATGAAGGATTTCAGGGTGGAAAGAAGCATTTGCTGAAGAACATTAGGAGAAGAAGCAAGTATAACAAACTGCAACAAGGAGGAGCATTGACTTCCATGAAACATGGCCTGGAGGCTGAAGTTGAGAAACTGAAGAAGGATCAGAACATACTGAAATTGGAAATTCTGAAGTTGAGACAGCAACAAGAGACTTCACAGGTTCAGCTTGTAAATGTTCAAGAACGCGTTCGGTCTGCTGAGTTGAAGCAGTGCCAGATGATGTATTTCCTGACCAAAATGGCCCGAAGACCAACTTTGGTTCAGCAGTTAATCCAGAAGGTAAAGCGAAAAAGAGAGCTCAGTGGAGGTGAGATCAGTAAGAGACCCAGATTGCTTGGAACCCCTTGCCCTATGAACTTCCCCAAGGCCATGGGCACCAGGCCTGATGTTGATTGTAGACAAGATAATAAGGACTTGGCTTCATTGCAATCAGAGCTCAATGGACTCTTGTCTGAAACAGTGAGCAATAGCAGAATACAGCCTGCAGTTCCTTCTCCCCTGAGAGATGAACTATGCAGTCCGGGATTAAGAACCAATTCTTCAAGTGCAAGTGCTAATGCTGTATCTTCCGCGGCCTGCTGTATGATGTCAGAAAAACTGATGGCAGAGAACTCTGTTGTTGATGAAGGGCTTGATGTGAATGATTCAAATATCTATCTTGAATTGGAGGATTTGATTAGCAAACCAACTGACTGGGTTGGATCTTCTGCAAGTGGATTGGTGGGGCAAACTGGTTGCTGCAAGACTGCTTCTACACTTCACACAGATGCTGCTGCTGCTGCAACAGCAATGATGCTTAGGCTCTGCAACATAATACCTACTTGCAAAGTGAGAACTCGGATTGCTGTCACCAGTTGTTACATGATATAG 1515 0.4752 MVVAHGGSGGIGHGGRSESISTVLLNEAMAGVARVKSEQEMVSDEDTCRSSSGGYCDVEGEPHDGVSSEDSGRKSSQVTDEEFKPVHVKLEAPGGTVDDDGGAGANGSCYSSPIFLPQPMEGLHEVGPPPFLKKTFEMVEDPVTDPIVSWSEARDSFIVWDSHEFSRILLPKYFKHSNFSSFIRQLNTYGFRKIDSDRWEFANEGFQGGKKHLLKNIRRRSKYNKLQQGGALTSMKHGLEAEVEKLKKDQNILKLEILKLRQQQETSQVQLVNVQERVRSAELKQCQMMYFLTKMARRPTLVQQLIQKVKRKRELSGGEISKRPRLLGTPCPMNFPKAMGTRPDVDCRQDNKDLASLQSELNGLLSETVSNSRIQPAVPSPLRDELCSPGLRTNSSSASANAVSSAACCMMSEKLMAENSVVDEGLDVNDSNIYLELEDLISKPTDWVGSSASGLVGQTGCCKTASTLHTDAAAAATAMMLRLCNIIPTCKVRTRIAVTSCYMI 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g0398 504 MobiDBLite consensus disorder prediction 62 83 - -
Lele20g0398 504 SMART hsfneu3 127 220 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele20g0398 504 PRINTS Heat shock factor (HSF) domain signature 169 181 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele20g0398 504 PRINTS Heat shock factor (HSF) domain signature 182 194 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele20g0398 504 PRINTS Heat shock factor (HSF) domain signature 131 154 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele20g0398 504 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 117 348 IPR027725 -
Lele20g0398 504 Coils Coil 236 263 - -
Lele20g0398 504 FunFam Heat shock transcription factor 1 124 221 - -
Lele20g0398 504 Gene3D - 124 221 IPR036388 -
Lele20g0398 504 Coils Coil 347 367 - -
Lele20g0398 504 ProSitePatterns HSF-type DNA-binding domain signature. 170 194 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele20g0398 504 SUPERFAMILY "Winged helix" DNA-binding domain 127 220 IPR036390 -
Lele20g0398 504 MobiDBLite consensus disorder prediction 34 83 - -
Lele20g0398 504 Pfam HSF-type DNA-binding 131 220 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g0398 Lele-ChrLele20 11712976 11715253 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g0398 117 462 HSF AT2G26150 40.845 3.41e-87 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lele20g0398 HSF_DNA-bind 7.7e-32 CL0123