Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g0397 ATGCCGTCTTGGCTTTTAGCTTCCTCTGGGAACGTCGCCCATATGGATTCTAGAATTACCATTTCTGATTCCAACGATATCAGCAATAATCATGGAAGCGGAGTTTTCTGCATAGCCAGCAGTTCCCAAACTCGTTTCACTACTCCGGAAGCTTCACCTCCTTCAGATAATCGTTCTTGGCGACGGTCGGGAAGTTCCGGTTCACTGCTCATTCTGGCGGCCAGAAGCCCTTTCTTCAAGAGCGTGTTCTCTGGGAAGGAGAGGAATGGGGTCAAATTGGAATTGAAGGAATTGGCTGAGGATTACGAGGTTGGTTTCGATGCGATTGTGGGTGTTGTGAGTTATTTGTATAGTGGGAAAGTAAGGCCGTCGCCCAAAGGTGTTTGTAGGCGTGTGGACGATGATTGCTCCCATCTTGGCTGTCAACCTGCTGTGGAATTCATGGCTCAACTTCTCTATGCTTCTTCCACGTTTGAAATATCTGAGTTGGTTCATCTTTATCAGGTAGCAGCAGATGAAATTTTGCCGGTTCTTTCTGTAGCAAATATATGTGGTAAATCCTGTGAGAATCTGCTTGCAAGGTGTGCTGAGTTGATTGTTAAATCTGATGTTGCTGTAATTACCCTTGAAAAAGCTCTGCCACAGTATATTGTGAAACAAATTATTGATAAACGTATAGAATTAGGCTCGGACAAGCCCAAGACCATCTGTTTGCCAGATAAATATGTGAAGAGAATACATAGGGCTCTTGATTCTGATGATGTTGAGTTGGTCAGGTTGCTCTTGAGAGAGGGACATACTAATATAGATGATGCTTATGCCCTTCATTATGCTGTTGCATACTGTGATGCCAAGACCACAACTGAGCTTCTTGATCTCGGGCTCGCCGATGTTAATTGTAAAAATCCAAGGGGATATAGTGTGCTGCATGTGGCTGCAATGAGGAAGGAGCCTAAGATTATAGTGTCCCTTTTGACAAAGGGAGCCCAGCCTTCTGATCTCACTTTCGATGGTAGGAAAGCCCTTCAAATTTCGAAGCGCCTCACGAAGGCGGTGGATTATTATAATGCTGAGGAAGGAAAGACGTCTTCTAGGGAAAGATTGTGCATAGAGATATTAGAACAAGCCGAGAGAAGAGAGCCTTTACTTGGGGAGGCTTCGTTTTCTCTTGCTATGGCAGGGGACGACTTGCGTATGAAACTGCTGTACCTTGAAAACAGAGCATCAGAGTTGCAGGATCAAGTTAAGAGTGTTATTAGGACAGCTGTGGATTTGAATGAGGCACCTTTCAAAATAAAGGAGGAGCACCTAGCCAGGATGAGAGCACTCTCTAGATCTGTCGAATTAAGCAAGCGATTCTTTCCTCGGTGTTCAGAAGTTTTGAACAAGATCATGGATACTAATAGCCTATCACAGATTGCATGTAAGGGTAATGACACTCCAGAAGAAAGACAAGCCAAGGAAGAAGGTACATGCAGCTCCAACAAGTTCTGA 1494 0.4444 MPSWLLASSGNVAHMDSRITISDSNDISNNHGSGVFCIASSSQTRFTTPEASPPSDNRSWRRSGSSGSLLILAARSPFFKSVFSGKERNGVKLELKELAEDYEVGFDAIVGVVSYLYSGKVRPSPKGVCRRVDDDCSHLGCQPAVEFMAQLLYASSTFEISELVHLYQVAADEILPVLSVANICGKSCENLLARCAELIVKSDVAVITLEKALPQYIVKQIIDKRIELGSDKPKTICLPDKYVKRIHRALDSDDVELVRLLLREGHTNIDDAYALHYAVAYCDAKTTTELLDLGLADVNCKNPRGYSVLHVAAMRKEPKIIVSLLTKGAQPSDLTFDGRKALQISKRLTKAVDYYNAEEGKTSSRERLCIEILEQAERREPLLGEASFSLAMAGDDLRMKLLYLENRASELQDQVKSVIRTAVDLNEAPFKIKEEHLARMRALSRSVELSKRFFPRCSEVLNKIMDTNSLSQIACKGNDTPEERQAKEEGTCSSNKF 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g0397 497 Gene3D Potassium Channel Kv1.1; Chain A 68 208 IPR011333 -
Lele20g0397 497 Pfam NPR1/NIM1 like defence protein C terminal 413 488 IPR021094 -
Lele20g0397 497 Pfam NPR1/NIM1 like defence protein C terminal 346 408 IPR021094 -
Lele20g0397 497 Pfam BTB/POZ domain 70 168 IPR000210 GO:0005515
Lele20g0397 497 Coils Coil 408 428 - -
Lele20g0397 497 FunFam BTB/POZ domain and ankyrin repeat-containing protein NPR1 215 367 - -
Lele20g0397 497 Pfam Ankyrin repeats (3 copies) 247 331 IPR002110 GO:0005515
Lele20g0397 497 MobiDBLite consensus disorder prediction 475 497 - -
Lele20g0397 497 SUPERFAMILY Ankyrin repeat 245 346 IPR036770 -
Lele20g0397 497 ProSiteProfiles BTB domain profile. 71 125 IPR000210 GO:0005515
Lele20g0397 497 SMART ANK_2a 304 333 IPR002110 GO:0005515
Lele20g0397 497 SMART ANK_2a 241 269 IPR002110 GO:0005515
Lele20g0397 497 SMART ANK_2a 270 300 IPR002110 GO:0005515
Lele20g0397 497 PANTHER REGULATORY PROTEIN NPR3 413 488 IPR044292 GO:0009862|GO:2000022|GO:2000031
Lele20g0397 497 Gene3D - 218 443 IPR036770 -
Lele20g0397 497 SUPERFAMILY POZ domain 70 167 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g0397 Lele-ChrLele20 11706559 11709409 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Lele20g0397 Ank_2 9.6e-07 CL0465