Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g0390 ATGTTTTTCTATCAGAGATTGTTGTGGTTGGCGCTGCTTATGAATCTGGGGAATGCTCAGAACCAGTGTGCCCATGATGATCAAAGTGTTCCGTTCCGTATCGTGAAGGACAAACTTGATAGTAGCAATCCCTGTGCTGATTCCTTCACTACAACTGACAATGTCGAGATGGCTAAGTTCCCGGGAGTAGAAGCTCTTCAAGGAGTCAGGCTCGCAGTGGTATCAAAAGACTACAAGTCCCGCATCTTACAATTATGTGATGTTGGAGGTTGTCTTCCTAAACTCTATCTACGACTTCGTAATTCATCCATTTATCCTTTCCAGTTTGAATCATATGGGCTGGCATCATCCAACAGAACTTTCCGTGTTACCTTTTTCGATTGTTCATCGATTGAGTCCAAACAAGATATGCATGTTTGCCCGATTTATGCTGTTGGCCCCACCGATGGCATCCTGAAGAAGGGCGTAGCCTTTTGCACCAAGATGTTGCAGTTAGATTCGCCATTAGAACCATATGAATTTCGGTTGGAAACATTCCAACTTAGATGGTCCCAGCCCAAATGTGGTGCAGAAAACAGCAAGCCAATATTATTCAAATTTGTTTTACCAGCTTCGGGATACCCTCAACACTCTTTTTGTCCTCCTTTTTCATCGATCAACTTGCTACTTTCATCGTCAAAAGTCATGGCGGGAACAGCACCTGAGGGTTCACAGTTTGATGCTCGTCAATTTGATGCCAAGATGAGTGAATTACTTACAGCTGATGGGCAGGATTTCTTTGCATCTTATGATGAGGTCTATGATAGTTTTGATGCTATGGGCTTGCAGGAGAATCTTCTGAGAGGCATTTATGCATACGGTTTTGAGAAGCCGTCGGCCATTCAGCAAAGGGGAATTGTTCCCTTCTGTAAGGGACTTGATGTGATCCAACAAGCTCAATCTGGAACTGGGAAGACAGCAACGTTTTGCTCTGGAATTTTGCAGCAACTTGACTATGGTTTGATGGAATGCCAGGCTTTGGTCCTAGCACCAACTCGAGAGCTTGCACAGCAAATTGAGAAGGTTATGCGAGCACTGGGAGATTATCTTGGCGTAAAGGTGCATGCATGTGTTGGAGGAACCAGTGTCCGTGAAGACCAACGCATTCTCTCTAGTGGTGTTCATGTTGTTGTTGGTACTCCTGGTCGTGTATTTGACATGCTGCGCAGGCAGTCGCTTCGGCCAGATTATATCAAGATGTTTGTATTGGATGAGGCTGATGAGATGCTCTCCAGAGGTTTCAAAGACCAGATTTACGATATATTCCAGTTGCTGCCAAGTAAAATTCAAGTGGGAGTTTTCTCTGCCACAATGCCTCCTGAGGCCCTGGAGATCACAAGGAAATTTATGAACAAACCTGTTAGGATCCTTGTAAAGCGTGATGAGCTCACCTTGGAGGGTATAAAGCAGTTTTATGTCAATGTAGACAAAGAAGAATGGAAGCTGGACACTCTCTGTGATCTTTATGAAACATTAGCTATCACTCAGAGTGTCATTTTTGTGAACACCCGAAGGAAGGTTGATTGGCTTACCGACAAGATGCGAAGCCGGGACCACACAGTGTCAGCAACCCATGGAGATATGGACCAAAATACCAGAGACATTATCATGCGTGAATTCCGTTCTGGTTCTTCTCGTGTTCTGATAACAACGGATCTCTTGGCACGTGGTATTGATGTCCAGCAAGTGTCTCTAGTTATTAACTATGATCTCCCAACTCAGCCTGAGAACTATCTCCATCGTATTGGTCGTAGTGGTAGGTTTGGGAGAAAAGGTGTTGCCATCAACTTCGTGACAAAGGATGATGAAAGAATGCTGTTTGACATTCAGAGGTTTTATAACGTGGTAATAGAGGAGCTGCCATCAAATGTTGCTGAACTCCTCTAA 1926 0.4429 MFFYQRLLWLALLMNLGNAQNQCAHDDQSVPFRIVKDKLDSSNPCADSFTTTDNVEMAKFPGVEALQGVRLAVVSKDYKSRILQLCDVGGCLPKLYLRLRNSSIYPFQFESYGLASSNRTFRVTFFDCSSIESKQDMHVCPIYAVGPTDGILKKGVAFCTKMLQLDSPLEPYEFRLETFQLRWSQPKCGAENSKPILFKFVLPASGYPQHSFCPPFSSINLLLSSSKVMAGTAPEGSQFDARQFDAKMSELLTADGQDFFASYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLMECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLFDIQRFYNVVIEELPSNVAELL 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g0390 641 SMART ultradead3 287 484 IPR014001 -
Lele20g0390 641 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 415 423 IPR000629 -
Lele20g0390 641 Gene3D - 259 476 IPR027417 -
Lele20g0390 641 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 480 641 IPR001650 -
Lele20g0390 641 CDD SF2_C_DEAD 481 611 - -
Lele20g0390 641 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 268 296 IPR014014 GO:0003724
Lele20g0390 641 FunFam Eukaryotic initiation factor 4A-III 476 641 - -
Lele20g0390 641 FunFam Eukaryotic initiation factor 4A-II 256 475 - -
Lele20g0390 641 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 299 469 IPR014001 -
Lele20g0390 641 CDD DEADc_EIF4A 272 470 - -
Lele20g0390 641 Pfam DEAD/DEAH box helicase 293 454 IPR011545 GO:0003676|GO:0005524
Lele20g0390 641 SMART helicmild6 521 602 IPR001650 -
Lele20g0390 641 Pfam Helicase conserved C-terminal domain 494 602 IPR001650 -
Lele20g0390 641 PANTHER RNA HELICASE 250 625 - -
Lele20g0390 641 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 337 622 IPR027417 -
Lele20g0390 641 Gene3D - 477 641 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g0390 Lele-ChrLele20 11653211 11662838 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g0390 229 641 Eukaryotic Initiation Factors Gene Family AT1G72730 88.889 0.0 765