LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele20g0382	ATGGAGAGAGAGAAAGGCTTAAGGGGTTGGTATGCAGTGTTGTTTACACTGCTTCTAATGTATGAGCTTGCGAGTTGTCAAGAACAGAGCAATTCCTGTGCTCCATCTCGTTGCGGCATTATCACAAACATCTCACATCCATTCCGACTACGAGATGACCCACTTGAGTGCGGCGATCCGATCTACGAGCTAGCCTGTGAAAACAATGTCACCCTGCTTCATCTGTATTCAGGAACATACAGAGTGCAGGGAATCAACTACAACAACTACACAATCCGACTCGTAGATGCTGGCATTCAGGACGGCGATTGCTCTTCCCTCCCTCGCTATCTCTTATCCATATCTAATTTCACCGATACTTACTACAATCATTACGATGATTATGATAGGCGTAACCCCTATAGCGCCACTCTGCAGTACGAAATTATGTTACAGCACGTAGTGTACTTGAAGTGCAGAGATGCAGTGAGGGACGACGAAGCGTACCTGGATACAGCTGCCTGCGTGAAATGGGAAGGAGGAGGTCACGTTTATGCTGTGGCCGGAGATTTGACGGCTGACCGGTTAAAATCTCAGTGTCGTGTGAAATCGGTGACCCCCATTACCCGAGGTTGGGAATCACTGGGACCTGGTGGAAGAATCAAGTCATACGCTGATATTCACAGAGGGATTTCCTTTGGATTTGAGCTTTCATGGTGGCGACGAGTTTGTGTTGATTTTAGCTGCCCCCACGATACCAGGTGCATCTACGACACTAGCACTGCAATTCCGCAACCGCAATGCCAGCGTAACTGTGATGCATTCTTCGGAATATATAGCGAATGCGGGCTGCCAAAGTTGCTCATAGCTGCTCTAGATTATGTCTACGGAATTGCAATAGGTCTAGTCAAAATTGCAGGGCTGGTTGATTCAGACTATTACAGAGACACTAGCCATTTTAGTGGATCAAATATTGCAATGCCATTGGGAATAGTCACGGGAAGATTCATTTTGCCATTCATCACAGCCAGATTTTTAGTTGGTATCATAGTCCTATCTGCATTGTTAATTTACAAATTTCGTACAAGGCACTTGTCAATGTATGAAAACATTGAAGATTTTATAAGACTTCACAACCTCCTTCCAATAAGGTACTCCTACAAGGATTTGAAGACAATGACCCAACGCTTCAACAATAAGTTAGGTGAAGGAGGATTTGGCACTGTATACAAAGGCAAATTAAGGAGTGGCTCTGATGTTGCTATCAAAATGTTGGGTAAATCCAAAGCTAATGATTCCCAAGAATTCATCAGTGAAGTGGCAACTATTGGGAGAATACACCATGTTAATGTGGTACACCTTGTTGGATTCTGTGTGGAGGGAAAGAAGCGAGCTCTTGTTTACGAATATATGTCCAATGGATCATTGGATAAATATATTTTTTCTAAACAAGAAAGCACCTCTTTGAATTATCATAAGATATATGAGATATCTCTTGGAATAGCTCGTGGGATTGCTTATCTTCACCATGGCTGTGATATGCAAATATTACATTTTGATATCAAGCCTCATAACATTCTTCTTGATGACAACTTCAATCCAAAGATTTCAGATTTTGGATTGGCGAGGTTATATTCTATTGATAACAGTATTGTTACTTTGACAGCAGCAAGAGGAACAATAGGGTATATGGCTCCTGAACTATTTTACAAGAATATTGGGGGAGTGTCATATAAGGCTGATGTATATAGCTTTGGAATGCTTTTGATGGAAATGGCTGGTCGAAGAAGGAATTTGAATCCAAATGCGGAACATTTAAGCCAACTTTACTTTCCCTTGTGGATTTACGACAAATTTGACGAAGAAAAAGATATAGAAATGGAAGATTTGACAGAAGAGGAAAAGAATTTAGCAAAGAAAATGTTTATAGTGGCACTATGGTGCATACAACTAAAACCCACAGATCGCCCTTCAATGAGTAAAGTAATAGAGATACTGGAAGTAGATGATGTTTCAACTCTTGAAATGCCCCCAAAACCTTCTTTATATCCTAATGAAGAAGTTTTGGTGGATGAAGGATCCTACTCTAGCTAG	2073	0.4134	MEREKGLRGWYAVLFTLLLMYELASCQEQSNSCAPSRCGIITNISHPFRLRDDPLECGDPIYELACENNVTLLHLYSGTYRVQGINYNNYTIRLVDAGIQDGDCSSLPRYLLSISNFTDTYYNHYDDYDRRNPYSATLQYEIMLQHVVYLKCRDAVRDDEAYLDTAACVKWEGGGHVYAVAGDLTADRLKSQCRVKSVTPITRGWESLGPGGRIKSYADIHRGISFGFELSWWRRVCVDFSCPHDTRCIYDTSTAIPQPQCQRNCDAFFGIYSECGLPKLLIAALDYVYGIAIGLVKIAGLVDSDYYRDTSHFSGSNIAMPLGIVTGRFILPFITARFLVGIIVLSALLIYKFRTRHLSMYENIEDFIRLHNLLPIRYSYKDLKTMTQRFNNKLGEGGFGTVYKGKLRSGSDVAIKMLGKSKANDSQEFISEVATIGRIHHVNVVHLVGFCVEGKKRALVYEYMSNGSLDKYIFSKQESTSLNYHKIYEISLGIARGIAYLHHGCDMQILHFDIKPHNILLDDNFNPKISDFGLARLYSIDNSIVTLTAARGTIGYMAPELFYKNIGGVSYKADVYSFGMLLMEMAGRRRNLNPNAEHLSQLYFPLWIYDKFDEEKDIEMEDLTEEEKNLAKKMFIVALWCIQLKPTDRPSMSKVIEILEVDDVSTLEMPPKPSLYPNEEVLVDEGSYSS	690

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele20g0382	690	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	509	521	IPR008271	GO:0004672\|GO:0006468
	Lele20g0382	690	Pfam	Protein kinase domain	391	656	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele20g0382	690	SMART	serkin_6	388	658	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele20g0382	690	FunFam	serine/threonine-protein kinase PBS1-like	358	463	-	-
	Lele20g0382	690	PANTHER	RUST RESISTANCE KINASE LR10-RELATED	361	675	IPR045874	GO:0004672
	Lele20g0382	690	Pfam	Wall-associated receptor kinase galacturonan-binding	33	96	IPR025287	GO:0030247
	Lele20g0382	690	ProSiteProfiles	Protein kinase domain profile.	388	667	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele20g0382	690	ProSitePatterns	Protein kinases ATP-binding region signature.	394	416	IPR017441	GO:0005524
	Lele20g0382	690	SUPERFAMILY	Protein kinase-like (PK-like)	372	661	IPR011009	-
	Lele20g0382	690	Gene3D	Transferase(Phosphotransferase) domain 1	464	668	-	-
	Lele20g0382	690	FunFam	PR5-like receptor kinase	464	670	-	-
	Lele20g0382	690	Gene3D	Phosphorylase Kinase; domain 1	364	463	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele20g0382	Lele-ChrLele20	11590704	11594475	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele20g0382	377	684	Receptor kinase-like Gene Family	AT5G38280	51.118	1.27e-101	323

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRK10L-2	Lele20g0382		Pkinase	2.9e-50	CL0016