Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g0378 ATGAGATCAGTTGCCGTTGCTGTTAACGGCGGCTCCAGAGCTGGCAGAGGTAGCCGGCGTGCCATCCAGTGGGCGGTGGAGAATCTTATGCCTCAAGCTGATAGGTTCATCTTAGTTCACGTTATGCCCAGAATCGCTTCAATTCCAACCCCATCCGGAGAGCGTATCCCTGTTATGGATCTAGACGCCAACGTGGCGGCAGCTTACATTCAGGATGTAAAGGAGAAGTTCGAGCGAATCTTCGTTCCATTCAAGAAACTCTGCAAAGCAAGCACAGTTGAAACTTTGTTGCTGGAAGATGACAATCCTGCAACTGCACTACTTAGATATATATCAGAATCAGAGATTCAAATATTAGTGTTGGGAACTGACTCTTCAAACTTTATAACAAGGAAGCTAAAAGGATCAGGGATACCAACAGATGTTCTAAAATGTGCTCCTGACACTTGTGACGTATATCTTGTAGCTAGAGATAGAATTATATCAAAATTAGCTGATTCTTCATCTTCACCCTCACGTGAGACTAGCTCTAGTTACTCTGATGTCGATGCTATCTTTGGTAGAGAGATAACTGGACTTAATTCTTCCACAACAGGAACTGGATTTCTCCCAAACATATTCCCATCAATGTCAGAGTGGAGTTATATAAGTTCTCAAACATCTAGTCCTGCAAATTCTCTTAAAGATCCCACTATAAATGAAGGCGATCTAGAAAGCTTTAGAGATGACACTGAAACTGCAAGCATCCGCTCATTCGATTCCATGGCTTCTGCACAAATTGAACAATCAGTCATGCAAGAAGTAGAGCAGCTGCAGCTGGAGTTACGTAATACTATTGCCATGTATAAACAGGTTTGCGAAGAGATGGCCTTTTCTCAAAGTAAGATTCATTTACTTTCAGCTGAATATATTGAAGAATCAAGAAGGGTAAATGATTCCGTCAAAAGAGAGGAGACTTTGAGAAAGATTGCTGCGGAAGAAAAAGAGAAGTATTTGAAAGTCATGAAGGAACTCGAGGAGGCGAAAATTAAGTTTGCAAAAGAGTCATATGAAAGGCAGATAGCTGAACTTAATGTCCTCAAAGAATCTGTAGAAAGGAAGAGAATAATTGATACAATGCTCTCAAGTGACAAGAGGTACAGAAAGTACACTATGGGCGAAATTATAGAAGCAACAAACGACTTCTCTAAGGATCTTTTAATTGGCGAAGGAGGTTATGGGAAGGTTTATAAGTGCAGCCTTGATCACACTACAGTAGCTGTAAAGGTTCTTCACCAGGATGCAATGAACAAGAAAGAGGAGTTTCTGAAGGAGGTTGAGATTCTGAGTCATCTACACCATCCACACATGGTTTTGCTGCTAGGAGCCTGTCCTGAAACTGGCTGCCTTGTTTATGAATACCTGGAAAATGGAAGCCTTGATGACTATCTTTTCAATAATAACAGTGGGAAACCGCCACTTCCTTGGTTCATTCGATTCCGTATGGTTTTTGAAGTAGCTTGTGGGTTATCATTCTTGCATAATTCAAAGCCTGAGCCAATCGTTCATCGAGATATGAAACCGGGAAATATCTTGTTGGACAGAAATTATGTGAGCAAAATTTCAGATGTTGGATTGGCTAAACTTATTTCAGACGTCATACCTGACAATATCACTGAGTACAGAGAATCTGTGCTTGCTGGTACTGTGCATTACATGGATCCAGAGTATCAGAGAACCGGCACTGTCCGACCAAAATCAGATGTATATGCATTGGGAGTTATAACTCTTCAACTTATAACTGCTCGCCATGCGTGCGGACTTATTTTAGCTGTTGAAAATGCGCTTCAAAATGGCTCCTTCTCTCATATTTTAGATAAATCGGCCGGAGATTGGCCGCTGACTGAGACAGAAGAGTTGGCTCAACTTGCCCTAAGATGCTCGGCACTGAGATGCAGAGATAGACCAGATCTTGATACTGAAGTTCTTCCATTGCTCAAAAGAATCTGTGATGTGGCAAATGCTACTGCAAAAGTGGGAAGAAATAGTAGCACAGGCCCCCCAAGCCAATATTATTGTCCAATCCTTCAGGAAATAATGGATGATCCACATATTGCGGCAGATGGTTTTACGTACGAGTACAGAGCAATCAAGGCATGGCTCAGCAAACACAATGTATCACCTGTAACTAAGCTTACAATGCAGCATTCTACGTTGATTACAAACCATACCTTACATTCCGCCATTAAGGAGTGGAGATCAGGACAAAAGGGAAGCACACCATATGATGATATTTGA 2277 0.4168 MRSVAVAVNGGSRAGRGSRRAIQWAVENLMPQADRFILVHVMPRIASIPTPSGERIPVMDLDANVAAAYIQDVKEKFERIFVPFKKLCKASTVETLLLEDDNPATALLRYISESEIQILVLGTDSSNFITRKLKGSGIPTDVLKCAPDTCDVYLVARDRIISKLADSSSSPSRETSSSYSDVDAIFGREITGLNSSTTGTGFLPNIFPSMSEWSYISSQTSSPANSLKDPTINEGDLESFRDDTETASIRSFDSMASAQIEQSVMQEVEQLQLELRNTIAMYKQVCEEMAFSQSKIHLLSAEYIEESRRVNDSVKREETLRKIAAEEKEKYLKVMKELEEAKIKFAKESYERQIAELNVLKESVERKRIIDTMLSSDKRYRKYTMGEIIEATNDFSKDLLIGEGGYGKVYKCSLDHTTVAVKVLHQDAMNKKEEFLKEVEILSHLHHPHMVLLLGACPETGCLVYEYLENGSLDDYLFNNNSGKPPLPWFIRFRMVFEVACGLSFLHNSKPEPIVHRDMKPGNILLDRNYVSKISDVGLAKLISDVIPDNITEYRESVLAGTVHYMDPEYQRTGTVRPKSDVYALGVITLQLITARHACGLILAVENALQNGSFSHILDKSAGDWPLTETEELAQLALRCSALRCRDRPDLDTEVLPLLKRICDVANATAKVGRNSSTGPPSQYYCPILQEIMDDPHIAADGFTYEYRAIKAWLSKHNVSPVTKLTMQHSTLITNHTLHSAIKEWRSGQKGSTPYDDI 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g0378 758 Pfam U-box domain 681 749 IPR003613 GO:0004842|GO:0016567
Lele20g0378 758 Gene3D Phosphorylase Kinase; domain 1 373 467 - -
Lele20g0378 758 ProSitePatterns Serine/Threonine protein kinases active-site signature. 514 526 IPR008271 GO:0004672|GO:0006468
Lele20g0378 758 ProSiteProfiles U-box domain profile. 679 752 IPR003613 GO:0004842|GO:0016567
Lele20g0378 758 ProSiteProfiles Protein kinase domain profile. 395 659 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele20g0378 758 SMART serkin_6 395 659 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele20g0378 758 SUPERFAMILY Protein kinase-like (PK-like) 377 652 IPR011009 -
Lele20g0378 758 Gene3D Transferase(Phosphotransferase) domain 1 468 667 - -
Lele20g0378 758 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 680 752 IPR013083 -
Lele20g0378 758 Coils Coil 321 367 - -
Lele20g0378 758 Coils Coil 268 288 - -
Lele20g0378 758 ProSitePatterns Protein kinases ATP-binding region signature. 401 422 IPR017441 GO:0005524
Lele20g0378 758 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 1 155 - -
Lele20g0378 758 Pfam Protein tyrosine and serine/threonine kinase 400 652 IPR001245 GO:0004672|GO:0006468
Lele20g0378 758 CDD RING-Ubox_WDSUB1_like 684 724 - -
Lele20g0378 758 CDD STK_N 3 157 - -
Lele20g0378 758 SMART Ubox_2 683 745 IPR003613 GO:0004842|GO:0016567
Lele20g0378 758 PANTHER OS02G0152300 PROTEIN 4 744 - -
Lele20g0378 758 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 368 467 - -
Lele20g0378 758 SUPERFAMILY RING/U-box 679 747 - -
Lele20g0378 758 Gene3D HUPs 1 160 IPR014729 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g0378 Lele-ChrLele20 11538775 11543924 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g0378 3 747 Plant U-box Gene Family AT5G57035 53.706 0.0 832
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Lele20g0378 PK_Tyr_Ser-Thr 2.3e-41 CL0016