Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g0359 ATGGTGGACCTGCTGGTGGCTGAGGTTGGTTTTAGGTGTCTGAGAATTTTAGTATTAAGGTCTCAATGTTTTGTTGGTATGAAGCCACAATATCCAGATGCTTTAACGATATATGAAATGGGATAACTTGATTGGAGGTTTCAAGAACTAAAAGGCTGTAACACTGTATTCTTTGTACACAACACATGCTTAATGAAGTCATTTCTGTCATTGAATCATACTGATACTGACGTCAATTGTCCACACCTTGATTCTAATCACTCAATGGCTCGAGTTCCTTATCCATATGGTGATCCTTTTTATGGTAGCTCTGTAGTATCTTATGGATCACAGGCTATTAATCAACCCCAAATGGTTCCCCAAATGCTGGGGCTTGCATCTACCAGAGTTGCATTGCCACTCGATCTCGCAGAAGATGGGCCCATTTATGTCAATGCAAAACAATACCATGGAATACTGAGAAGGCGACAGTCACGAGCAAAGCTCGAGGCTCAAAACAAACTTATCAAAAGCCGTAAGCCATATCTTCATGAGTCTCGGCATCGCCATGCTTTGAACAGGGTTAGGGGATCTGGAGGACGCTTTCTCAGCACCAGACAGCTTCAACAGTCCAATGCACAAGTTTTGACTAGTGCCAACTCTGGTTCAGACTCTGTAAATAACTTGTATCAAAAGAAAGATGCATCTTCGGAGGTGGAGATTCATCCCTCATGGACTGGCGCTGGTGAAAGTGCATCTTCTATCTCGACCTGCTCCGACATTACAAGTGGGTCCAGAAACAATGTCAACTTTAGGCAGCAGCCAGAGTGCAAGTTCTTGGGGAACTCTCCAAACATGGGCAGTGCATCACAGTGCAGCGGTGGACTCACCTTCAGTGGTGGGACCCAGCAATGCGCACCAATCGTCCGGTGA 912 0.4507 MVDLLVAEVGFRCLRILVLRSQCFVGMKPQYPDALTIYEMGXLDWRFQELKGCNTVFFVHNTCLMKSFLSLNHTDTDVNCPHLDSNHSMARVPYPYGDPFYGSSVVSYGSQAINQPQMVPQMLGLASTRVALPLDLAEDGPIYVNAKQYHGILRRRQSRAKLEAQNKLIKSRKPYLHESRHRHALNRVRGSGGRFLSTRQLQQSNAQVLTSANSGSDSVNNLYQKKDASSEVEIHPSWTGAGESASSISTCSDITSGSRNNVNFRQQPECKFLGNSPNMGSASQCSGGLTFSGGTQQCAPIVR 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g0359 303 PRINTS CCAAT-binding transcription factor subunit B signature 172 195 IPR001289 GO:0003700|GO:0006355
Lele20g0359 303 PRINTS CCAAT-binding transcription factor subunit B signature 141 163 IPR001289 GO:0003700|GO:0006355
Lele20g0359 303 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 141 195 IPR001289 GO:0003700|GO:0006355
Lele20g0359 303 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 74 262 IPR001289 GO:0003700|GO:0006355
Lele20g0359 303 SMART cbf3 137 198 IPR001289 GO:0003700|GO:0006355
Lele20g0359 303 Gene3D - 138 200 - -
Lele20g0359 303 ProSitePatterns NF-YA/HAP2 subunit signature. 143 163 IPR018362 GO:0003677|GO:0016602
Lele20g0359 303 ProSiteProfiles NF-YA/HAP2 family profile. 138 198 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g0359 Lele-ChrLele20 11385742 11389860 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g0359 83 204 CCAAT-HAP2 Transcription Factor Family AT1G17590 58.065 1.19e-38 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Lele20g0359 CBFB_NFYA 4.9e-27 No_clan