Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g0336 ATGGCTTCTTCAGCGAGCAGAGCATTAAAATCACTCCCTAAACTTCATACTTCAAGCGCAAGCAATCGCAGAACCCATCATGGAGCACCCTCAATCACCAAACCTTTTGCTTGTTACTCCCATTCCACAAAAACCTTCTCCAATTCTCTTCTCTACCATTCGGAAATCCAAAGGAGTAGATATATTCAACCCTTTGGTTTCGTCATTTTCATCGACGAGCCCACATTTCTGGTTATAGGTTACAGTGAAAACGCGCACGATTTTCTGGGTCTTGATGCTCCACAATCAGTTCCAGATCTGGAGAACTCTGAAACTCTCGAGATTGGGTCCGACGTTCGGAATTTCTTCACCCCATTTAGCGTGCTTCAGCTTGAAAAGGCATTTGAAGCTCAAGAACTGTCACGGTTGAACCCCATTTGGGTTCGTTCTAAGAATTTGGGGAAGCATTTCTATGCGATTCTACACAGGATTGATGTCGGGGTTGTGATTGATTTCGAGCCTGCCAGAACAGAGGATCCTGAGTTATCCATTTCTAGGACAATGCAATCTCAGAAGCTAGCAGGACGAGCAATTTCGCGGTTTAAATCATTTCCTGGTAGGGATATTAATCACCATTGTCATATTCTAGTTCAAAGTGTCAGAGAACTTACCGGCTATGATAGGGTAATGGCTTATAAATTTCATGAACACGGGCATGGTGAGGTTATTGCTGAGAGTAAGAAGCCAGACTTAGAGCCTTATGTTGGTTTGCATTATCCTGTTTTTGATATTCCTCAGGATTTGAAGTTGTCGTTCAAGAGAAATCGAATTAGCATCATCGTGAATTGCCATGAAACTCCTGTTCATGTGATTCAAGATGAAGGTCTCAAGCAGCCTTTATGCTTGACTGAATCAGCCCTTCTTGCCCCACATGAGTGTCATGCTAAGTACATGGCCAATATGAGATCAACTGCTTCATTGGTTATGGCAATAGTAATAAATGAGAATAATAATGAAGTTGTTCCTAATTTTACTTCAATAAGGAAGCTATGGGGCCTAGTTGTTTGCCTTCACACTTCGGCTAGATTTGTTCCTTTCCCTTTCCGCTGTACATACGAATTCCTAATTCAGGCCTTTGAGCTCAAACTGAATGTGGAACTTCAATTGGAATCAGCATTATTGGAGAAACAAATTCTGAGGACTCAGACTGTTTTGTATGATATGCTGCTTAGGGACTCTCCAATTGGTATTGTTACTCAATCCCCAAGTATTATGGACCTTATGAAGTGTGATGGAGCAGCTCTTTACTACCATGGAAACTACTATCCCTTAGGCGTCACTCCGAATGAGTCCCAGGTAAAGGACATTATAGAGTGGTTGATGACCTTCCATGGAGATTCAACAGGCTTAAGTACAGATAGTCTGGCTGATGCAGGTTATCCAGGAGCTGGGTCTCTTGGTGATTCAGTTTGTGGAATGACTGTGGCTTATATCTCAGAAAAAGATTTTCTATTCTGGTTCAGATCCCGCGAGGCAAAAGAGATCGACCGGGATTGTGAAAAGGATTTGGAAATGAATGCAATTCACTCTTTGCAGCTTATACTACAAGAATCTATAATGAAGGATGTTGAGCATAGAAATTCTAAGCCTGTTGTAGATTCTAAGTCTACAGGTGTAGATGATCTAATTTGGATGGCCAAGGAAATGGTTAGATTGATAGAAACTGCTATTGCTCCCATATTTTCTGTAGATGTCGATGGACAAATAAGCGGGTGGAATGCTAAGGTTGTGGACTTGACTGGACTCTCAGTTGAGGAAGCTGTGGGAAAGTCATTGGCTCATGATCTTGTGCATAAGGAGTCTGAAGAAGCTGTAGATAGGCTTGTTTCTCGTGCTTTAAGAGGTGAAGAAGATAAGAATGTTGAGATAAAACTGAGGACCTTTAGCCCACAAAACAATAATATGGCAGTTTTTGTAATGGTGAATGCTTGCTCCAGCAAGGATCATATGAATGGAATCACTGGAGTATGCTTTATTGGTCAGGATGTTACTGATCAAAAAGAGGTAATGGACAAATTTATTCACTTACAAGCTGACTACAAGGCCATCGTACATACCGCGAGTCCATTAGTCCCTCCCATTTTCATGTCGGATGCTAACAGATGCTGTTCTGAGTGGAACACTGCCATGGAAAAGCTTACCGGTTGGGTTCGTGGTGATGTCATTGGGAAATTGTTGGTGGGAGAGGTTTTTGGTAATTGCTGTCAACTGAAGGGTTTGAATGCTCAAGCCAAGTTCTTGATTGTCTTGAACAATGTACATGGTGGAAAAAGTACAGAAAAATTCCCACTTTCATTCGTTGATCGGTATGGAAACTTTGTGCAAGCCCTTTTAACTGCCCATAAGAGAGTTAACTCAGATCGTGAGATTATTGGGGCTTTATGCATTTTGCATACTGCAAGTTCTGAACTTCAACTAGCTCTGGATGTAAAGAGGAAAATGGAGAAGAATTGCCTTGCTGCTGTCAAAGAATTAGCTTACATTCGTCAAGAAATAAAAAATCCTTTGAGTGGAATACGATTTAGTAACTTTCTTTTGAAGGGTACTGATTTGACTGAAGATCAAAATCAGCTTCTTGAGGCTGGTGATGCTTGTGAGAAGCAGATGTTCAGGATAATACATGATGTTGGCCTCGAGCGCATCGAGAACGGGTCCTTGGAATTTGAGGAGGAGGAATTCCTACTTGGGGATGCTGTAAATGCAGTGGTTAGCCAAGTGATATTATCACTGAGAGAGAGACATTTACAGCTGATTTGTGATAGTAAAAGAATCAAGACACTTACAGTTTATGGTGATCAATTGAGGATTCAACAGGTTTTGGCTGATTTCTTATTGATCATGGCACGTTATGCTCCATCTCCAGATGGTTGGGTAGAAATTGATGTTGATCCTACATTCAAACAAATTTCTGATGATCTTACTCTTCTGCATGCTACATTCAGGATGATATGTCCTGGTGAAGGTCTTCCTTCTGGACTGATTCAAGAAATGTTCCATGGAAGTGAGTGGAGAAGTGAAGAAGGGTTAGGGCTTAGCGTGAACAGGAAGATCTTGAAGTTCATGGATGGTGAGGTCCAATATATCAGGGAAGCTGGAAAAAGCTTCTTCTTGATTGTGCTGGAGAAAGTGCCGAGAAGGTGCCATGGGACAGCACAAGAACCAGGAGCTGGCGTCGGAGCAGCTGCTCAAGGTGTTGGCTCCGGCATTGGCAAAAGCTACAGTGGCGGCGGCTCTACCGAATTCTACAAATCCTTGCTTACAAACTTATGA 3309 0.4204 MASSASRALKSLPKLHTSSASNRRTHHGAPSITKPFACYSHSTKTFSNSLLYHSEIQRSRYIQPFGFVIFIDEPTFLVIGYSENAHDFLGLDAPQSVPDLENSETLEIGSDVRNFFTPFSVLQLEKAFEAQELSRLNPIWVRSKNLGKHFYAILHRIDVGVVIDFEPARTEDPELSISRTMQSQKLAGRAISRFKSFPGRDINHHCHILVQSVRELTGYDRVMAYKFHEHGHGEVIAESKKPDLEPYVGLHYPVFDIPQDLKLSFKRNRISIIVNCHETPVHVIQDEGLKQPLCLTESALLAPHECHAKYMANMRSTASLVMAIVINENNNEVVPNFTSIRKLWGLVVCLHTSARFVPFPFRCTYEFLIQAFELKLNVELQLESALLEKQILRTQTVLYDMLLRDSPIGIVTQSPSIMDLMKCDGAALYYHGNYYPLGVTPNESQVKDIIEWLMTFHGDSTGLSTDSLADAGYPGAGSLGDSVCGMTVAYISEKDFLFWFRSREAKEIDRDCEKDLEMNAIHSLQLILQESIMKDVEHRNSKPVVDSKSTGVDDLIWMAKEMVRLIETAIAPIFSVDVDGQISGWNAKVVDLTGLSVEEAVGKSLAHDLVHKESEEAVDRLVSRALRGEEDKNVEIKLRTFSPQNNNMAVFVMVNACSSKDHMNGITGVCFIGQDVTDQKEVMDKFIHLQADYKAIVHTASPLVPPIFMSDANRCCSEWNTAMEKLTGWVRGDVIGKLLVGEVFGNCCQLKGLNAQAKFLIVLNNVHGGKSTEKFPLSFVDRYGNFVQALLTAHKRVNSDREIIGALCILHTASSELQLALDVKRKMEKNCLAAVKELAYIRQEIKNPLSGIRFSNFLLKGTDLTEDQNQLLEAGDACEKQMFRIIHDVGLERIENGSLEFEEEEFLLGDAVNAVVSQVILSLRERHLQLICDSKRIKTLTVYGDQLRIQQVLADFLLIMARYAPSPDGWVEIDVDPTFKQISDDLTLLHATFRMICPGEGLPSGLIQEMFHGSEWRSEEGLGLSVNRKILKFMDGEVQYIREAGKSFFLIVLEKVPRRCHGTAQEPGAGVGAAAQGVGSGIGKSYSGGGSTEFYKSLLTNL 1102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g0336 1102 SMART pas_2 691 762 IPR000014 -
Lele20g0336 1102 SMART pas_2 560 627 IPR000014 -
Lele20g0336 1102 CDD HisKA 838 889 IPR003661 GO:0000155|GO:0007165
Lele20g0336 1102 FunFam Phytochrome 385 525 - -
Lele20g0336 1102 Pfam PAS fold 52 168 IPR013654 GO:0006355
Lele20g0336 1102 SMART HKATPase_4 944 1057 IPR003594 -
Lele20g0336 1102 Gene3D PAS domain 55 304 - -
Lele20g0336 1102 ProSiteProfiles PAS repeat profile. 692 744 IPR000014 -
Lele20g0336 1102 PANTHER OS08G0260000 PROTEIN 51 895 - -
Lele20g0336 1102 FunFam Phytochrome 554 686 - -
Lele20g0336 1102 Pfam PAS fold 561 676 IPR013767 GO:0006355
Lele20g0336 1102 Pfam PAS fold 692 811 IPR013767 GO:0006355
Lele20g0336 1102 Gene3D - 182 509 IPR029016 -
Lele20g0336 1102 ProSiteProfiles Histidine kinase domain profile. 840 1057 IPR005467 -
Lele20g0336 1102 SMART HisKA_10 833 897 IPR003661 GO:0000155|GO:0007165
Lele20g0336 1102 Gene3D - 880 1050 IPR036890 -
Lele20g0336 1102 Pfam Phytochrome region 393 509 IPR013515 GO:0006355|GO:0009584
Lele20g0336 1102 Gene3D PAS domain 557 681 - -
Lele20g0336 1102 ProSiteProfiles PAS repeat profile. 558 629 IPR000014 -
Lele20g0336 1102 PRINTS Phytochrome signature 654 671 IPR001294 GO:0006355|GO:0009584
Lele20g0336 1102 PRINTS Phytochrome signature 116 138 IPR001294 GO:0006355|GO:0009584
Lele20g0336 1102 PRINTS Phytochrome signature 301 322 IPR001294 GO:0006355|GO:0009584
Lele20g0336 1102 PRINTS Phytochrome signature 561 577 IPR001294 GO:0006355|GO:0009584
Lele20g0336 1102 PRINTS Phytochrome signature 580 595 IPR001294 GO:0006355|GO:0009584
Lele20g0336 1102 PRINTS Phytochrome signature 216 235 IPR001294 GO:0006355|GO:0009584
Lele20g0336 1102 PRINTS Phytochrome signature 674 694 IPR001294 GO:0006355|GO:0009584
Lele20g0336 1102 Gene3D - 385 504 IPR043150 -
Lele20g0336 1102 SUPERFAMILY PYP-like sensor domain (PAS domain) 567 679 IPR035965 -
Lele20g0336 1102 Pfam His Kinase A (phospho-acceptor) domain 838 897 IPR003661 GO:0000155|GO:0007165
Lele20g0336 1102 Gene3D PAS domain 705 817 - -
Lele20g0336 1102 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 201 370 IPR016132 -
Lele20g0336 1102 SUPERFAMILY PYP-like sensor domain (PAS domain) 55 171 IPR035965 -
Lele20g0336 1102 SUPERFAMILY GAF domain-like 388 533 - -
Lele20g0336 1102 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 891 1053 IPR036890 -
Lele20g0336 1102 SUPERFAMILY GAF domain-like 181 375 - -
Lele20g0336 1102 CDD PAS 569 640 IPR000014 -
Lele20g0336 1102 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 944 1050 IPR003594 -
Lele20g0336 1102 TIGRFAM sensory_box: PAS domain S-box protein 565 682 IPR000014 -
Lele20g0336 1102 SUPERFAMILY PYP-like sensor domain (PAS domain) 706 809 IPR035965 -
Lele20g0336 1102 CDD HATPase_Phy-like 943 1054 IPR044767 -
Lele20g0336 1102 CDD PAS 703 811 IPR000014 -
Lele20g0336 1102 Pfam GAF domain 205 380 IPR003018 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g0336 Lele-ChrLele20 11129811 11134640 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g0336 39 1054 Histidine Kinase Gene Family AT4G16250 56.676 0.0 1197