Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g0313 ATGAGATCAGCTGGCCATTCCGGGGTTGTAGTGAATGACAGAACCTCCTCGGGCTGTTTAATTGTTAGAAAGAAAGGAGATGGATTGGGTGGTGGATTTGGTTCTTCGAGCAGCTCGCGGAAGCTTTATGAATCGAAGGTTAGGAAAAGGCCCAGTGTAGCTGAGAGTGATTCAGAATCAAGCGATGAGTTGCTGATGCCTCCAAAGAGAAGGCTTGGTTCTGAGACTATTCGTGTCTGCAATGGGTTGACTGCTTTTGAGCAGGCTATAGGAGAAAGGAGTGAAATTGGTAGAAAGGGGGATAGAACGGAGCAAATCAGACGTAATGAGGATTCTGTGTTTGATAAGAATGGTTTGGAGCAGAGAGAAACGAAGAGGAATAAACTGGACGTGTTTAATTTTGATGAATATGATGATGGTTTAGATGTGCAAATGACTCAAAGGAGGAAATTTGATGGTGATAATGGAGTTAGTTTTGGAGGAAGAAGGTTTATGGAACCAATGCCTGCTGCTTCTAGTGGCATTGAGAGGGAATCTGAAACAGGGTCAGGTAGACACATTGTTTATAGTAGAAGGAATTCTTATTATGACAGGGCTAGTAGCTTGTATCTAGGAGATAATAGTAATCAGAGCAGGTTAAAAGCAAAGAAGGGTGATGCTCAACTACCTCTGTCTTTGCTAAAAAATAAGTTTAAATCAGATGAATCCATCCGGGTTCAGGGGAAAAATGGTGTTCTAAAGGTGATGGTTAATAATAAGAAGAAGAAGGCTGGCCCGTTGGAGCACTATGGTCATCTCAAACCTATGGAACGCAGACAGAGTTTAAGGATTGACGCCACTGCCAAGAAGAACCCTCGAGTCCATCCTTCATCGTACTCAGAAACAAAACTTGTTCAGAAGCCTGGTTTAGTTGCTAGGCAAGAGAAAAAACGGATAGCATCAAAAAAGTCATTTTCAACTAAGCACAATAAGGGCCGTGCTTGGGATACAGAAGACAGTTACTTGTCATTGAATCAGGAGTTAGAAACTTCTAAAACTTGCAAGTCTTTGAAGAGGGTAGGTTCTGATGAGGAACAGACTCCTTTGCGTGAGAAACTCCCAACTAAAATCATTAAAGAAGGGAAAGTAAGGCGGGGTAGTGGCACCGAAAAACAGAAGCTGCGAGAAAAACTAAGGGAGATGCTACTGAGTGCAGGATGGACTATAGATTATCGGCCTCGGAGGAATAGAGACTATCTGGATGCAGTTTACATTAATCCAGGGGGTACAGCCTATTGGTCTATCATCAAAGCCTATGATGCTCTGCAAAAGCAATTGAATGGTGGTGATGACGAGGCCAACCCCATGGGTTATGGTTCTTCCTTTGCTCACATCTCAGACGAGATGTTGAGTCAATTAACAAGAAAAACTCAGAAAAAGATGGAGAGAGAATTGAAGAAGAAAATCGATGGTAGTGAGAGCGAGAGCGATAGTGAAAGAGAAACCAACCGTAAGAGATCTGCCAGAGACAAGCATGATATGAATAGCACAGATAGTGATAGCAATGAAGAGAAATTAAGCCCTTTCATAAAGCAGGGAAGTAAGTCATTGAAAAACAAGATGACAGAAAATGCTGTTGCCAGAACTAGCTTTAAATCCCAGAAACCTAGCAGGCGCAAACACGATGAAACTGACAAGTCATTATCTGAATGTGATACTCATCTGTCGCATGGGAGGAAAAGTAGAAAACATGGAAGATGTACTTTGTTAGTTGGGAGTTCTAGCAAGGGATTGAATTCAGAATCTGGTGGTTTTGTTCCATATACTGGCAAAAGAACAGTGCTTTCTTGGTTGATTGACTCTGGGACAGTTGCTTTGAGCCAAAAGGTTCAGTATCGGAGACGGAAACGAGTACTGCTGGAGGGATGGATTGCAAGTGATGGCATTCATTGTGGCTGCTGCAGTAAAATCCTCACAATTTCCAAGTTTGAGATTCATGCAGGTAGCAAATTGCGCCAGCCATTTCGAAACATATATTTGGATTCGGGAGTTTCTCTTCTACAATGTCAACTAGATGCATGGGATAAACAAGAGAATTGTGAGAAAATTAGTTATCATTCTGTGGATATTAATGGTGATGATCCAAATGATGACACTTGCGGTATATGTGGAGATGGTGGGGCCTTAATCTGCTGTGATGGTTGTCCATTAACATTTCACCAGAGCTGCTTGGGTATTCAGGTGCTTCCTCCTGGTGAATGGCATTGCCCAAATTGCACCTGCAAATTTTGTGGAATAGCCATTGGAACTGTTAAAAAAGGAGGTGCTGCTGCATATGATCTACATACTTGTAACCTATGTGAGAAAAAATACCATGAATCTTGTGCTGAGAAGATGGATGCCCTTTATATTAAATCCAATACATCATGCTTTTGTTTCTGTGGAAAAGAGTGCAAACAGCTTTTTGAGCATTTGAAGAAGTACCTAGGTACCAACCATGAGCTAGAGGCAGGATTTTCATGGTCTCTTATTCATAGAACAGACGAAGACTCAGAGGCAGCTAGTAGAGGAATTTTTCAAAGGGTGGAATGCAACTCCAAGCTAGCTGTTGCACTGACTATCATGGATGAATGCTTTTTACCTGCTGTTGACCGGAGGAGTGGGATCAATTTAATTCATAATGTTTTATATAATAGTGGGTCAAACTTCAGTAGGTTGAATTATAATGGTTTTTACACTGCTATTCTGGAGAGGGGTGATGAAATAATTTCTGCAGCATCTATCAGGTTTCATGGGACTAGGATAGTGGAGATGCCATTTATTGGAACTCGCCATATATATAGGCATCAGGGCATGTGCCGCCGGCTTTTTTCTGCTATTGAATCGGCCCTCCGCTCAATGAAGGTTGAGATAATGATTATTCCAGCAATTGCTGAACTCATGCAAACATGGACAAAGAATTTTGGCTTCACACATCTTGAGGAATCACTGAGGCAAGAACTGAGGTTTTTGAATATTCTGGTGTTCCCTGGTATAAATATGCTACAGAAGGTGCTAGTAGAGAAAGGAAACTTTGAGGGAAACACAGCTGCCTCAGGTGTTGAGAAAATGGAAAATGGAGACGAAGTTAGTATTAAGCCAAAATTGGCCGACGGGTCAGATGATTCCTCAAATCAACAAGATCGTGATGGAAGTGATAATGCTGGTTCAAATCCTGCCAATGAGATAAATGATGAATGTATTGATGCATCTCAGGAGACGAAGGATCTGGTTTTATCCGACAGGACAGTGTGCTCCAAATCTCATTCCGAGGATATGCTATTTGAATCGGCTTCAGATAAATGTTCTTCTCCGTATGGTACAAATCATGTTGCACCGGAGACGGAAAATCCAGTGAAAGATAATTTGCATACACCTGGCAAAAGTCAGATCATTTCTCCGAACGATACTTCTATTGATGCACATCGATCAGATGCTCCGGATTGCCCTGAAAATTGTGGTTTGGTCCCGGAAACTGCTCCCTCTGATTCTAATTTGACAGAAGACCTGGTTGAACCTATCTCTGACCTGAAAAGTCACTTGCCCACTGCTGTAAATGGTGATTCATCTGAGAATGAGATGAATCCAGTGGTGGATAATATGGTGTCATCTTGA 3633 0.4187 MRSAGHSGVVVNDRTSSGCLIVRKKGDGLGGGFGSSSSSRKLYESKVRKRPSVAESDSESSDELLMPPKRRLGSETIRVCNGLTAFEQAIGERSEIGRKGDRTEQIRRNEDSVFDKNGLEQRETKRNKLDVFNFDEYDDGLDVQMTQRRKFDGDNGVSFGGRRFMEPMPAASSGIERESETGSGRHIVYSRRNSYYDRASSLYLGDNSNQSRLKAKKGDAQLPLSLLKNKFKSDESIRVQGKNGVLKVMVNNKKKKAGPLEHYGHLKPMERRQSLRIDATAKKNPRVHPSSYSETKLVQKPGLVARQEKKRIASKKSFSTKHNKGRAWDTEDSYLSLNQELETSKTCKSLKRVGSDEEQTPLREKLPTKIIKEGKVRRGSGTEKQKLREKLREMLLSAGWTIDYRPRRNRDYLDAVYINPGGTAYWSIIKAYDALQKQLNGGDDEANPMGYGSSFAHISDEMLSQLTRKTQKKMERELKKKIDGSESESDSERETNRKRSARDKHDMNSTDSDSNEEKLSPFIKQGSKSLKNKMTENAVARTSFKSQKPSRRKHDETDKSLSECDTHLSHGRKSRKHGRCTLLVGSSSKGLNSESGGFVPYTGKRTVLSWLIDSGTVALSQKVQYRRRKRVLLEGWIASDGIHCGCCSKILTISKFEIHAGSKLRQPFRNIYLDSGVSLLQCQLDAWDKQENCEKISYHSVDINGDDPNDDTCGICGDGGALICCDGCPLTFHQSCLGIQVLPPGEWHCPNCTCKFCGIAIGTVKKGGAAAYDLHTCNLCEKKYHESCAEKMDALYIKSNTSCFCFCGKECKQLFEHLKKYLGTNHELEAGFSWSLIHRTDEDSEAASRGIFQRVECNSKLAVALTIMDECFLPAVDRRSGINLIHNVLYNSGSNFSRLNYNGFYTAILERGDEIISAASIRFHGTRIVEMPFIGTRHIYRHQGMCRRLFSAIESALRSMKVEIMIIPAIAELMQTWTKNFGFTHLEESLRQELRFLNILVFPGINMLQKVLVEKGNFEGNTAASGVEKMENGDEVSIKPKLADGSDDSSNQQDRDGSDNAGSNPANEINDECIDASQETKDLVLSDRTVCSKSHSEDMLFESASDKCSSPYGTNHVAPETENPVKDNLHTPGKSQIISPNDTSIDAHRSDAPDCPENCGLVPETAPSDSNLTEDLVEPISDLKSHLPTAVNGDSSENEMNPVVDNMVSS 1210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g0313 1210 CDD PHD2_CHD_II 713 752 - -
Lele20g0313 1210 Pfam PHD-finger 713 755 IPR019787 -
Lele20g0313 1210 SMART PHD_3 712 753 IPR001965 -
Lele20g0313 1210 MobiDBLite consensus disorder prediction 468 576 - -
Lele20g0313 1210 MobiDBLite consensus disorder prediction 1186 1210 - -
Lele20g0313 1210 MobiDBLite consensus disorder prediction 1055 1069 - -
Lele20g0313 1210 MobiDBLite consensus disorder prediction 1032 1054 - -
Lele20g0313 1210 MobiDBLite consensus disorder prediction 42 69 - -
Lele20g0313 1210 MobiDBLite consensus disorder prediction 1188 1210 - -
Lele20g0313 1210 MobiDBLite consensus disorder prediction 514 545 - -
Lele20g0313 1210 Pfam Tify domain binding domain 635 684 IPR032308 -
Lele20g0313 1210 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 898 988 IPR016181 -
Lele20g0313 1210 MobiDBLite consensus disorder prediction 549 570 - -
Lele20g0313 1210 ProSiteProfiles Zinc finger PHD-type profile. 710 755 IPR019787 -
Lele20g0313 1210 MobiDBLite consensus disorder prediction 468 513 - -
Lele20g0313 1210 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 699 813 IPR013083 -
Lele20g0313 1210 MobiDBLite consensus disorder prediction 1128 1146 - -
Lele20g0313 1210 ProSitePatterns Zinc finger PHD-type signature. 713 752 IPR019786 -
Lele20g0313 1210 SUPERFAMILY FYVE/PHD zinc finger 701 759 IPR011011 -
Lele20g0313 1210 MobiDBLite consensus disorder prediction 1118 1172 - -
Lele20g0313 1210 PANTHER PHD FINGER PROTEIN 12 361 1116 IPR042163 GO:0003714|GO:0045892
Lele20g0313 1210 MobiDBLite consensus disorder prediction 23 69 - -
Lele20g0313 1210 MobiDBLite consensus disorder prediction 1024 1069 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g0313 Lele-ChrLele20 10893255 10902180 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g0313 2 1059 PHD Transcription Factor Family AT4G14920 47.575 0.0 886
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lele20g0313 TDBD 2.7e-20 No_clan