Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g0311 ATGAGATCAGCCGGCCCTTCTGGGGTTGTGGTGAAGAGCGGGAACTCCTCGGGCTGTTTAATTGTTAGAAAGAAAGGAGATGGGTTGGGTGGTGGATATGGTTCTTCAAGCAGCTCTCGGAAGTTGTATGAGTCAAAAGTTAGGAAAAGGCCTAGCATGGCTCTGAGTGATTCAGAATCAAGCGATGATGAGTTGCGGATTCCTCCAAGTAGAAGGCTTGGTCCTGAGACTATTCGAGCCTGTAATGGATTTACTGCTTCAGAGCGTGGTATAGTGGAAGGCAATGGACTTGGTAGAAAGAGGGATAGAATGATGCAAATCAGGCGTAATGAGGATGCTATGATTGAGAAGAATGGGTTGGAGCAGAGGGAAAGAAAGAAGACTAAAATGGAACCTTTTGATTTTTATGAACATTATGGTATGGATGTGGAGAAGATGAAAAGGAGGTTTCTTTATGATAATGATGGAATTGGTTTCGGGGGACGAAGGTTTATGGGACCAATGCATGCCGCAACAAGTAGCAGACACACTCTTGATGATAGAAACAATTCCAATTATGGAAGGCATAGTGGATTGTATCTGGGAGATACTGTTGGCTCCAGCAGGTTCAATGTGAATAGGGATGATGCTCCCCCACGTCTACCCTTGCTGAAAGATAAGTTGAAATCAAGTGAAATCATCAGGGTTCAGGGGAAAAATGGTGTTTTAAAGGTTATGGTTAGTAGGAATAAGGTGGGAGGCCCATCATCAGAGTACTATAATCACCACAAACCTATACAAAACAGACAGAATTTGCAGACTGAGGCCCCTATGAAGAGGAATATTCCCGTCCATTCTTCATCATACTTAGAAACAAAATTCGTTGAGAAGCCAGGTTTAGTTGGTAGGCCTGAGAAAAAACGGATGCCATCAAGAAAATCTTTGTCAATTAAGGAAAGCAAGGGACATGATTGGGACTCTGAGGACAGTGAGGCACCATTGAATCAAGGACTAGAAGTTACTAAACCCTTCAAGTCTATGAAGAGAGTAGGTTCTGAGGATGAAAATACTCCTTTACGTGAGAAGCTCCCAACTCAAATAATAAAAGAAGGAAAGGAGGGAAAAGAAGGAAAAGTAAGGCGCGGGAGTGGTACAGAAAAACAGAAACTTCGAGAAAAAATAAGGGAGATGCTGCTTAGCTCAGGTTGGACTATAGATTATCGTCCTCGAAGGAACAGAGACTATCTGGATGCAGTTTACATCAATCCAGGGGGTACAGCCTACTGGTCAATAATCAAAGCATATGATGCTCTTCAAAAGCAATTGAATGGTGATGATAATGAGGCCAAGCCTGTGGGCGATGGTTCTTCCTTTGCTCGTATCTCAGATGAAGTGCTGAGTCAATTAACAAGGAAAACTCGGAAAAAGATGGAAAAAGAGTTGAAGAAGAAGCAAAGAGATGGTAGTGAGAGTGATAGTGAAATGGAGCCCAACCTTAAAAGATCTGCCAATTTCAGGCATGATGTGAATAGCATGGATAGCGATAGCAATGAAGAGAAATTAAGCTCTTTTATGAAGCAGGGAAGTAATTCAACCAAAAATAAGACGACTGAAAATGTTGCCAGTGTTAGCTTTAAATCCCAGAAATCAACCCATCAATTACATGATGGAATTGAAAATTCGTTGTCTGGATGTGATCCTCATCAGCCACATGGGAGGAAAAGTAGAAAACACGGAAGATGTACTTTGTTAATCCGTAGTTCTAATAAGGGAGCGAATTCAGAATCTGATGGCTTTGTTCCATATACAGGCAAAAGAACGGTACTTTCCTGGTTGATTGACTCTGGGACAGTTCAGTTGAGCCAAAAGGTTCAGTACCGCAAACGAAAACGAGTGATGCTGGAGGGATGGATCACAAGAGATGGCATTCATTGTGGATGTTGCAGCAAAATCCTTACAGTTTCCAAGTTTGAGATTCATGCAGGTAGCAAATTGCGCCAGCCATTTCAAAATATATATTTGGATTCAGGAGTATCACTTCTACAGTGCCAAATAGATGCATGGTGGAGACAGGATAATTCAGATAAAATTAGTTTTCATTCTGTTGATGTTGACGGCAATGATCCAAATGATGACACTTGCGGTATATGTGGAGATGGAGGGGATTTGATCTGTTGTGATGGTTGTCCATCAACATTTCATCAGAGATGCTTGAATATACAGATGGTTCCTCCTGGTGAGTGGCATTGTCCAAAGTGCACCTGCAAATTTTGTGGAATAGCCAATGGGGCTGTTAAAAAAGGAGATGCTGCTGCTGTATATGCTTTTGCCACTTGCAACTTATGTGAGAAAAAATACCATGAATCTTGCACTAAGGAGATGGATGCTGTTTCTGTCGACTCCAATATGCCAGGCTTTCATTTTTGTGGAAAAGAGTGCAAAGAGCTTTTTGAGCACTTGAAGAAGTACCTAGGCACCAAGCATGAGCTAGAAGCAGGCTTTTCATGGTCTCTTATTCATAGAGCAGATGAAGACTCAGAGGCAGCTGGTAGAGGAATTTTTCAAAGGGTGGAATGCAACTCCAAGCTAGCTGTTGCACTCACTGTGATGGATGAATGCTTTTTACCCATTGTTGATCGAAGGACTGGCATCAATTTAATTCATAATGTTCTATATAATAGTGGATCAAACTTCAGTAGGTTGAATTATAGTGGCTTTTATACAGCTATTCTGGAGAGGGGAGATGAGATAATTTCTGCAGCATCTATCAGGTTCCATGGGACTAAGTTGGTGGAGATGCCATTTATTGGAACTCGCCATATATATAGGCGCCAGGGGATGTGCCGCCGGCTTTTTTCTGCCATCGAATCGGCCCTCTACTCTATGAAGGTTGAGAAAATGGTTATTCCAGCAATTGCTGAACTCACACAAACATGGACAGAAATTTTTAGCTTCACGCCTCTTGAAGAATCACTCAGGCAAGTAATGAGATCATTGAATATGCTGGTCTTCCCTGGTATTGATATGCTGCAAAAGTTGCTTGTGGATCAAGGAAACTTTGAAGGGAACACAACTTTCACAGGTGCTGATAAAACGAACCATGTAAACAAAGTTCATGCTAAGCCAAAATTGGCTAATTCCTCATCTAATCTTGATCCTGATGGAAGCGATGATGCCGGTTTAGATCCTCTTAATGAGATAAAAGATGACAGTAGTGATGGTTCTTTAGATCAAATCAATCAAGTTTTGTCTGACAAGATTGTATGTTCCAAATCCTGTTCTGGGGATAGGCTATCTGACTCATCTTCAGATAGATGTTCTTCTCCCTCTAATACTAGTCATGATATGCTGGAGATGGAAAATAAAGCGGTGACTTCTCCGTCAATGAAAGATAATCTGCATATGTCTATCGACTGTCAGGGCAATCCTCTGAATGACACTTCTATTGATATACATCCGTCAGATGCTCCAGATGGCCCCGAAAATCACACTTTGGTTCAGAGAGCTGCTACTTCCGATCCCAATTGGACCAAAAACCCGGTTGAACCTGTTTCTGACTGGGAAGGACATTTGCCTACTGCTATAAATGGTGACTCATCTGAGCACGAGATGAACCTGATGTTGGATTCTCAAATGATGGATAATAATACTACCTCTTTTGGGGAGGTTTACATGAATAATTTTCAAGAGGTTCATGAAGCTGTTCCTTCAGGGAGTTTGTCTGAAGACGATGTTACCAACAATAACAATGAAAATACAGATGCGTCTGATTCTGATCTCAACCATGCAGACAGGAACGAAATTGAGTATGAAGGGGAAAGAACTCTATATATGGACGCCGGAGTTGCTTCAAAAGAAATGCAATTTTATGGAAGTGGCATTAATGCATCCAGTGATAGTTCTGAAACTGATTCGGAGTAA 3900 0.4159 MRSAGPSGVVVKSGNSSGCLIVRKKGDGLGGGYGSSSSSRKLYESKVRKRPSMALSDSESSDDELRIPPSRRLGPETIRACNGFTASERGIVEGNGLGRKRDRMMQIRRNEDAMIEKNGLEQRERKKTKMEPFDFYEHYGMDVEKMKRRFLYDNDGIGFGGRRFMGPMHAATSSRHTLDDRNNSNYGRHSGLYLGDTVGSSRFNVNRDDAPPRLPLLKDKLKSSEIIRVQGKNGVLKVMVSRNKVGGPSSEYYNHHKPIQNRQNLQTEAPMKRNIPVHSSSYLETKFVEKPGLVGRPEKKRMPSRKSLSIKESKGHDWDSEDSEAPLNQGLEVTKPFKSMKRVGSEDENTPLREKLPTQIIKEGKEGKEGKVRRGSGTEKQKLREKIREMLLSSGWTIDYRPRRNRDYLDAVYINPGGTAYWSIIKAYDALQKQLNGDDNEAKPVGDGSSFARISDEVLSQLTRKTRKKMEKELKKKQRDGSESDSEMEPNLKRSANFRHDVNSMDSDSNEEKLSSFMKQGSNSTKNKTTENVASVSFKSQKSTHQLHDGIENSLSGCDPHQPHGRKSRKHGRCTLLIRSSNKGANSESDGFVPYTGKRTVLSWLIDSGTVQLSQKVQYRKRKRVMLEGWITRDGIHCGCCSKILTVSKFEIHAGSKLRQPFQNIYLDSGVSLLQCQIDAWWRQDNSDKISFHSVDVDGNDPNDDTCGICGDGGDLICCDGCPSTFHQRCLNIQMVPPGEWHCPKCTCKFCGIANGAVKKGDAAAVYAFATCNLCEKKYHESCTKEMDAVSVDSNMPGFHFCGKECKELFEHLKKYLGTKHELEAGFSWSLIHRADEDSEAAGRGIFQRVECNSKLAVALTVMDECFLPIVDRRTGINLIHNVLYNSGSNFSRLNYSGFYTAILERGDEIISAASIRFHGTKLVEMPFIGTRHIYRRQGMCRRLFSAIESALYSMKVEKMVIPAIAELTQTWTEIFSFTPLEESLRQVMRSLNMLVFPGIDMLQKLLVDQGNFEGNTTFTGADKTNHVNKVHAKPKLANSSSNLDPDGSDDAGLDPLNEIKDDSSDGSLDQINQVLSDKIVCSKSCSGDRLSDSSSDRCSSPSNTSHDMLEMENKAVTSPSMKDNLHMSIDCQGNPLNDTSIDIHPSDAPDGPENHTLVQRAATSDPNWTKNPVEPVSDWEGHLPTAINGDSSEHEMNLMLDSQMMDNNTTSFGEVYMNNFQEVHEAVPSGSLSEDDVTNNNNENTDASDSDLNHADRNEIEYEGERTLYMDAGVASKEMQFYGSGINASSDSSETDSE 1299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g0311 1299 MobiDBLite consensus disorder prediction 293 331 - -
Lele20g0311 1299 MobiDBLite consensus disorder prediction 462 532 - -
Lele20g0311 1299 Coils Coil 460 480 - -
Lele20g0311 1299 MobiDBLite consensus disorder prediction 1085 1110 - -
Lele20g0311 1299 ProSiteProfiles Zinc finger PHD-type profile. 704 749 IPR019787 -
Lele20g0311 1299 MobiDBLite consensus disorder prediction 1233 1249 - -
Lele20g0311 1299 PANTHER PHD FINGER PROTEIN 12 365 1289 IPR042163 GO:0003714|GO:0045892
Lele20g0311 1299 MobiDBLite consensus disorder prediction 21 74 - -
Lele20g0311 1299 MobiDBLite consensus disorder prediction 462 508 - -
Lele20g0311 1299 MobiDBLite consensus disorder prediction 293 323 - -
Lele20g0311 1299 ProSitePatterns Zinc finger PHD-type signature. 707 746 IPR019786 -
Lele20g0311 1299 SUPERFAMILY FYVE/PHD zinc finger 696 753 IPR011011 -
Lele20g0311 1299 MobiDBLite consensus disorder prediction 509 532 - -
Lele20g0311 1299 MobiDBLite consensus disorder prediction 1034 1069 - -
Lele20g0311 1299 CDD PHD2_CHD_II 707 746 - -
Lele20g0311 1299 Pfam PHD-finger 707 749 IPR019787 -
Lele20g0311 1299 Pfam Tify domain binding domain 629 679 IPR032308 -
Lele20g0311 1299 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 695 797 IPR013083 -
Lele20g0311 1299 SMART PHD_3 706 747 IPR001965 -
Lele20g0311 1299 SMART PHD_3 748 807 IPR001965 -
Lele20g0311 1299 MobiDBLite consensus disorder prediction 42 70 - -
Lele20g0311 1299 MobiDBLite consensus disorder prediction 1228 1259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g0311 Lele-ChrLele20 10884495 10890404 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g0311 2 1008 PHD Transcription Factor Family AT4G14920 49.319 0.0 894
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lele20g0311 TDBD 1.1e-21 No_clan