Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g0310 ATGCCTTCAGTTGCAGATGATCCAAAAGGATCCATTTGTGTTTTTGTTGGTGGCATATGTTTTAAGTGGCTTGTCTACATTTTGATGGTCAATAGATATGAAAGCTGGAAAATTTATGGATTGTTTTCTTTGTTGTTGTTATTGCTGCTGCAGTCTCTTGTAGCGAACGAGGATTTTCAGCACATTCTTCGTGTTCTAAACACGAATGTCGATGGTAAGCAGAGGATCATGTTCGCCCTTACCTCCATCAAAGGTATTGGTCGTCGCTTCGCCAATATTGTCTGCAAGAAAGCCGACGTCGATATGAACAAAAGGGCTGGTGAAATATCGGCTGCTGAACTTGATCAGCTAATGACAATTGTGGCAAATCCACGCCAATTCAAGATTCCGGACTGGTTTCTTAACAGGAAGAAGGATTACAAAGATGGTAAATACTCCCAGGTTGTTTCTAACGCATTGGACATGAAACTCAGGGATGATCTTGAGCGTTTGAAGAAAATCAGAAACCACCGTGGTCTGCGACACTACTGGGGTCTTCGAGTTCGCGGACAGCACACCAAGACCACAGGACGCAGGGGGAAGACTGTTGGTGTCTCTAAAAAGCGTTAA 609 0.4368 MPSVADDPKGSICVFVGGICFKWLVYILMVNRYESWKIYGLFSLLLLLLLQSLVANEDFQHILRVLNTNVDGKQRIMFALTSIKGIGRRFANIVCKKADVDMNKRAGEISAAELDQLMTIVANPRQFKIPDWFLNRKKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g0310 202 FunFam 40S ribosomal protein S18 51 130 - -
Lele20g0310 202 ProSitePatterns Ribosomal protein S13 signature. 171 184 IPR018269 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lele20g0310 202 Gene3D 30s ribosomal protein s13, domain 2 142 192 IPR027437 -
Lele20g0310 202 Hamap 30S ribosomal protein S13 [rpsM]. 62 202 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lele20g0310 202 Pfam Ribosomal protein S13/S18 64 192 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lele20g0310 202 FunFam 40S ribosomal protein S18 142 193 - -
Lele20g0310 202 ProSiteProfiles Ribosomal protein S13 family profile. 65 195 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lele20g0310 202 SUPERFAMILY S13-like H2TH domain 63 198 IPR010979 GO:0003676
Lele20g0310 202 Gene3D - 51 130 - -
Lele20g0310 202 PANTHER 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 52 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g0310 Lele-ChrLele20 10880666 10884409 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g0310 52 202 Cytoplasmic Ribosomal Protein Gene Family AT4G09800 95.364 5.00e-106 299