Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g0271 ATGAATCAAGTAGTGAAGGAGGAGATTATTATGGAGGTGAGCACCACCGTGGGTGCTCCACCACCACTGCCAATGGAGGGGCTTCACGAAGCTGGTCCTCCGTCGTTTCTGACAAAAACATACGCCATCGTCGACGATGTTTCCACCAACCACATCGTTTCGTGGAGCCGAGGTAACAATAGCTTCGTTGTCTGGGATCCACAATCTTTCTCCATAAGCCTCCTTCCCAGATTCTTCAAACACAGCAATTTCTCCAGCTTTGTCAGACAGCTTAACACCTATGGATTCAAGAAGGTTGACCCAGATAGGTGGGAATTTGCAAATGAAGGGTTTCTGAGAGGACAAAAGCATCTTCTGAAGAACATAAGGAGAAAGAAAACACCTCATCAACAACAATATCAAGCTCATCTAGATCCATGCGTGGAACTAGGCCGGTTCGGGCTTGATGGAGAGATCAATCGGCTCCGGCGAGACAAGCAAGTCCTCATGTTGGAACTGGTGAAACTCAGACAACAACAACATAATACCAAAACCTACCTTCAACAAATGGAAGGTAGGCTCAAAAGGACTGAACAGAAACAGAAACAGATGATGAACTTCGTAGCAAGAGCTATGCAAAACCCTAACTTCGTTCACCAGTTAGTTCAGCAGAAAGAATGGAAGAAAGAGCTTGAAGAAGCAATTTCAAACAAGAGAAGAAGAACCATCGATCAAGGACCTAGCAGTAATGTTGAATTAGAATGCCCAGATTTCGTGGAACTTGATGAACCTAATATTATTGCTGCCGATCCGGATTTGGATTTGATTGGAAAGTTAGAGGAAGAAGATCAACATTATGTACAAGAAAATAATAATAGAGAGAAAGAGATTGATGATCAAGTGTTTTGGCAAGACCTGTTGAACGAGGATGTTGAAGAAGTTGTACGAGGTTTCGAGGAAGATGAAGAGGATGTTGATGTGTTGGCTGAACAACTTGGTTATTTAGCCTCTAATAATAGTCCTCATCAGTAA 1011 0.4293 MNQVVKEEIIMEVSTTVGAPPPLPMEGLHEAGPPSFLTKTYAIVDDVSTNHIVSWSRGNNSFVVWDPQSFSISLLPRFFKHSNFSSFVRQLNTYGFKKVDPDRWEFANEGFLRGQKHLLKNIRRKKTPHQQQYQAHLDPCVELGRFGLDGEINRLRRDKQVLMLELVKLRQQQHNTKTYLQQMEGRLKRTEQKQKQMMNFVARAMQNPNFVHQLVQQKEWKKELEEAISNKRRRTIDQGPSSNVELECPDFVELDEPNIIAADPDLDLIGKLEEEDQHYVQENNNREKEIDDQVFWQDLLNEDVEEVVRGFEEDEEDVDVLAEQLGYLASNNSPHQ 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g0271 336 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 22 246 IPR027725 -
Lele20g0271 336 SUPERFAMILY "Winged helix" DNA-binding domain 32 125 IPR036390 -
Lele20g0271 336 Gene3D - 28 126 IPR036388 -
Lele20g0271 336 SMART hsfneu3 32 125 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele20g0271 336 Pfam HSF-type DNA-binding 36 125 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele20g0271 336 Coils Coil 152 172 - -
Lele20g0271 336 PRINTS Heat shock factor (HSF) domain signature 36 59 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele20g0271 336 PRINTS Heat shock factor (HSF) domain signature 87 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele20g0271 336 PRINTS Heat shock factor (HSF) domain signature 74 86 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele20g0271 336 FunFam Heat shock transcription factor 1 29 126 - -
Lele20g0271 336 ProSitePatterns HSF-type DNA-binding domain signature. 75 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g0271 Lele-ChrLele20 10505060 10507544 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g0271 15 332 HSF AT3G22830 53.723 1.23e-122 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lele20g0271 HSF_DNA-bind 3e-31 CL0123