Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g0231 ATGGAAAACAAGGTGGCTTATGAGAATGATCTTAATCTCAAGGATACAGAGCTCAGATTGGGGTTACCAGGAAGAGAAGAACAACAACAACAACAATCACTGGTTAGCTCTAAGAAGAACAAGAGGCCTTTATCTGAAGCTTCTGAGGACTGTGGGAAAAAGGGTTCTAATGAATCAGCTCCTCCAGCAAAATCTTGTGGATCTGAAGCTAAAACTGATGATTTTGTTCATTTTGATAGGGCAAAGATTGTGGGGTGGCCGCCAATCAGATCTTACAGGAAGAACAGCTTGCAGGAGGTTGAGGCTTCTGGGATTTATGTGAAAGTGAGCATGGATGGAGCTCCATACCTCCGAAAGATTGATTTGAAGGTTTACAATGGCTACCCAGAACTCCTCAAGGCTTTAGAAAACATGTTCAAGTTAACCATAGGTCATTACAATGAGAGAGAGGGTTACAAAGGTTCAGAATTTGCTCCTACATATGAGGACAAGGATGGTGACTGGATGCTTGTTGGAGATGTTCCATGGGACATGTTTATGACTACCTGCAAAAGACTAAGAATCATGAAAGGATCAGAAGCTAGAGGATTGGGTTGTGGAGTATGA 606 0.4224 MENKVAYENDLNLKDTELRLGLPGREEQQQQQSLVSSKKNKRPLSEASEDCGKKGSNESAPPAKSCGSEAKTDDFVHFDRAKIVGWPPIRSYRKNSLQEVEASGIYVKVSMDGAPYLRKIDLKVYNGYPELLKALENMFKLTIGHYNEREGYKGSEFAPTYEDKDGDWMLVGDVPWDMFMTTCKRLRIMKGSEARGLGCGV 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g0231 201 SUPERFAMILY CAD & PB1 domains 95 190 - -
Lele20g0231 201 FunFam Auxin-responsive protein 99 201 - -
Lele20g0231 201 MobiDBLite consensus disorder prediction 25 41 - -
Lele20g0231 201 ProSiteProfiles PB1 domain profile. 104 191 IPR000270 GO:0005515
Lele20g0231 201 Gene3D - 98 201 - -
Lele20g0231 201 MobiDBLite consensus disorder prediction 1 69 - -
Lele20g0231 201 MobiDBLite consensus disorder prediction 1 22 - -
Lele20g0231 201 Pfam AUX/IAA family 16 198 IPR033389 -
Lele20g0231 201 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 11 195 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g0231 Lele-ChrLele20 9952871 9953738 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g0231 107 197 B3 DNA Binding Superfamily AT2G46530 36.264 7.39e-11 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lele20g0231 AUX_IAA 6.6e-54 CL0072