Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g0177 ATGTTAGATGGTGGACAGGAAGGTGCAGAGGAGGATGTGGAAAACAATAGCAATGAAGACCTAACTGGAGAACCACTTGAAACTGAGGATAGGGAAGAACAAGAACCTACAGAAAGGCCTAGGAAGACATCCAAATATATGACAAAATATGAGCGTGCCCGTATATTGGGTACCCGCGCTCTGCAAATCAGTATGAATGCACCTGTCATGGTGGAGTTGGAGGGGGAGACTGACCCTTTGGAGATTGCTATGAAGGAGCTTCGAGAGCGGAAGATTCCATTTAGCATCCGCCGATACTTGCCTGATGGAAGCTATGAAGATTGGGGAGTTGATGAACTGATTGTGGAAGACTCCTGGAAGAGGCAATTTCTCGATGCAGCAGATGATGCTAGTTGTGAGGGTTTAATATTCAAAACTTTATATGAAGATGCTACTATGTATGAACCTTCCATGCGGTCCCTCAACTGGCTAAAACTGAAGAAAGATTATCTTGAAAAATGCTTGATTGGGTCTACGGAGCTTTTCTCCTCCCTAGGGACAGCAATAATGAAGAATTTCAAAGCATTTGCACGGGATTCTGAGGCAATGCTTGAAGAACGTTCTGCTAGTCTTCGTTCCAAAGTGATTCCCAAACCAAAGTGGCAGGTGTGGGAGGTGAAAGCAGCAGACTTGACCATTAGCCCTGTTCACCGTGCAGCAGTAGGCATTGTAGATTCGGATAAGGCACAAACAATGTATTGA 741 0.4494 MLDGGQEGAEEDVENNSNEDLTGEPLETEDREEQEPTERPRKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFSIRRYLPDGSYEDWGVDELIVEDSWKRQFLDAADDASCEGLIFKTLYEDATMYEPSMRSLNWLKLKKDYLEKCLIGSTELFSSLGTAIMKNFKAFARDSEAMLEERSASLRSKVIPKPKWQVWEVKAADLTISPVHRAAVGIVDSDKAQTMY 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g0177 246 SUPERFAMILY RPB6/omega subunit-like 14 116 IPR036161 GO:0003677|GO:0003899|GO:0006351
Lele20g0177 246 Gene3D - 3 116 IPR036161 GO:0003677|GO:0003899|GO:0006351
Lele20g0177 246 MobiDBLite consensus disorder prediction 32 46 - -
Lele20g0177 246 Hamap DNA-directed RNA polymerase subunit Rpo6 [rpo6]. 45 100 IPR006111 GO:0003677|GO:0003899|GO:0006351
Lele20g0177 246 Pfam RNA polymerase Rpb6 43 94 IPR006110 GO:0003677|GO:0003899|GO:0006351
Lele20g0177 246 Gene3D - 117 163 - -
Lele20g0177 246 PANTHER DNA-DIRECTED RNA POLYMERASE SUBUNIT K 7 116 - -
Lele20g0177 246 PIRSF RpoK/RPB6 3 117 IPR006111 GO:0003677|GO:0003899|GO:0006351
Lele20g0177 246 MobiDBLite consensus disorder prediction 1 46 - -
Lele20g0177 246 PIRSF RPB6 3 117 IPR028363 GO:0003899|GO:0005634|GO:0005665|GO:0006351
Lele20g0177 246 ProSiteProfiles ATP-dependent DNA ligase family profile. 122 175 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Lele20g0177 246 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 119 162 - -
Lele20g0177 246 SMART RNA_pol_Rpb6_2 41 94 IPR006110 GO:0003677|GO:0003899|GO:0006351
Lele20g0177 246 FunFam DNA-directed RNA polymerases I, II, and III subunit RPABC2 2 117 - -
Lele20g0177 246 MobiDBLite consensus disorder prediction 1 31 - -
Lele20g0177 246 ProSitePatterns RNA polymerases K / 14 to 18 Kd subunits signature. 48 62 IPR020708 GO:0003677|GO:0003899|GO:0006351
Lele20g0177 246 Gene3D - 164 246 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g0177 Lele-ChrLele20 9141791 9147448 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g0177 121 245 Core DNA Replication Machinery Family AT1G08130 47.590 8.85e-30 115